New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 22 = 416960 (0.000)59 (0.900)
+CT		 41/196 0.5 100% intergenic (–/–) –/– –/–
?223 = 698 0 (0.000)intergenic (–/–) –/– –/–

TGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  22/41597‑41696
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  <  223/698‑616
                                                                                                    ||                                                                                   
TGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAAC                                                                                      <  2:1353186/101‑1
  CGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTT                                                                                    >  1:1481610/1‑101
   GTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTA                                                                                   >  1:192597/1‑101
   GTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTA                                                                                   >  2:503712/1‑101
   GTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTA                                                                                   >  1:545851/1‑101
      tAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTG                                                                                <  2:108299/100‑1
       AAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGA                                                                               >  2:583217/1‑101
       AAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGA                                                                               >  1:1612747/1‑101
       AAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGGGATGCTGCCAACTTACTGA                                                                               >  2:1138900/1‑101
         ATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATT                                                                             <  2:300294/101‑1
          TTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTT                                                                            <  1:901320/101‑1
            GTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAG                                                                          <  1:1595833/101‑1
            GTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAG                                                                          >  2:407608/1‑101
            GTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAG                                                                          >  1:388704/1‑101
                  GAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATG                                                                    <  1:963428/101‑1
                   AAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGA                                                                   <  1:104699/101‑1
                    AGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAGCTTACTGATTTAGTGTATGAT                                                                  >  2:1671484/1‑101
                     GATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                                 >  2:799731/1‑101
                         CTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGT                                                             <  2:526531/101‑1
                          TGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATAGTGTT                                                            <  2:1140524/101‑1
                           GACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                           <  1:1660576/101‑1
                             CTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                         <  2:366092/101‑1
                             CTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                         <  2:1374372/101‑1
                               AATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                       >  2:1366652/1‑101
                               AATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                       <  2:1181493/101‑1
                                ttccgatctAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                                                      <  2:687722/92‑1
                                ATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                                                      <  2:1525628/101‑1
                                 TCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                                                     <  2:1669736/101‑1
                                  CATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT                                                    >  2:868948/1‑101
                                  CATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT                                                    <  1:1080063/101‑1
                                  CATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT                                                    <  1:285908/101‑1
                                   ATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTG                                                   <  2:628399/101‑1
                                    TGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC                                                  >  2:764473/1‑101
                                         AGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGagatcggaa                                             >  1:687727/1‑92
                                           TGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTG                                           <  2:1492177/101‑1
                                              GATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                        >  1:1598361/1‑101
                                              GATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                        <  2:80515/101‑1
                                                     ACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTT                                 <  1:126710/101‑1
                                                      CGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTC                                <  2:525947/101‑1
                                                       GCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT                               <  1:1573216/101‑1
                                                       GCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT                               >  2:1349818/1‑101
                                                         CTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTAT                             <  1:963822/101‑1
                                                           TCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCA                           <  1:1380470/101‑1
                                                              AGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                        <  2:1558618/101‑1
                                                                   CAACATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC                   <  1:799736/101‑1
                                                                       ATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT               <  2:545846/101‑1
                                                                       ATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT               >  1:770776/1‑101
                                                                       ATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT               >  2:665226/1‑101
                                                                       ATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT               >  2:1353272/1‑101
                                                                       ATCATCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCT               <  1:643150/101‑1
                                                                           TCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC           <  2:791375/101‑1
                                                                           TCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC           <  1:1113159/101‑1
                                                                           TCGTTTCGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTC           <  1:407613/101‑1
                                                                                 CGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC     <  1:1421330/101‑1
                                                                                 CGACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTAC     <  1:853725/101‑1
                                                                                  GACGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT    <  2:1566766/101‑1
                                                                                    CGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATTAGCTGTCCCTCCTGTTCAGCTACTGA  >  1:22308/1‑101
                                                                                    CGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  >  1:572749/1‑101
                                                                                    CGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  >  1:815967/1‑101
                                                                                    CGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  >  1:319606/1‑101
                                                                                                    ||                                                                                   
TGCGTTCAAATTGTTTGGGAAGATACTGACTAATCATGCCCAGTGGGATGTCCACGCCTTCCAGATTCAACATCATCGTTTCGACGGGTGATGCTGCCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  22/41597‑41696
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGA  <  223/698‑616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.