New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	2	55659 =	45 (0.680)	30 (0.490)	19/184	2.6	59.2%	intergenic (–/–)	–/–	–/–
	?	70	= 22841	0 (0.000)					intergenic (–/–)	–/–	–/–

CTCAGGCAACACGCAAACGATTTACTCGTCGTATTTCAAGTTGCATGTGCTGCGGCTACGTTCGTTCACCCCAGTCACTTACTATTGTAAGCTCCTGGAG‑TTCACTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  2/55766‑55659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactcgTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTT  <  70/22841‑22743                                                                                                                                                                                                                  CTCAGGCAACACGCAAACGATTTACTCGTCGTATTTCAAGTTGCATGTGCTGCGCCTACGTTCGTTCACCGCAGCCACTTACTATTCTAAGCTCGTGGAG‑T                                                                                                            >  1:537041/1‑101     GGCAACACGCAAACGATTTACTCGTCGTATTTCAAGTTGCATGTGCTGCGGCTACGTTCGTTCACCCCAGTCACTTACTATTGTAAGCTCCTGGAG‑TTCAC                                                                                                        <  1:1261112/101‑1       CAACACGCAAACGATTTACTCGTCGTATTTCAAGTTGCATGTGCTGCGGCTACGTTCGTTCACCCCAGTCACTTACTATTGTAAGCTCCTGGAG‑TTCACTC                                                                                                      <  1:1341572/101‑1        AACACGCAAACGATTTACTCGTCGTATTTCAAGTTGCATGTGCTGCGGCTACGTTCGTTCACCCCAGTCACTTACTATTGTAAGCTCCTGGAG‑TTCACTCG                                                                                                     <  1:1379231/101‑1                                               GTGCTGCGGCTGCATTCGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTA                                                               <  1:1093437/101‑1                                                 GCTGCGGCTGCATTCGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATG                                                             >  1:1133346/1‑101                                                       gctgcaTTCGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAAT                                                       >  1:459052/7‑101                                                        ctgcaTTCGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATT                                                      <  1:623369/96‑1                                                           caTTCGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGT                                                   <  1:1315309/99‑1                                                             TTCGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTA                                                 <  2:354525/101‑1                                                               CGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAG                                               <  2:703023/101‑1                                                               CGTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAG                                               <  1:507742/101‑1                                                                GTTCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGC                                              >  1:658648/1‑101                                                                  tccCCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCAT                                            <  2:187365/98‑1                                                                  TCACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCAT                                            <  2:1631632/101‑1                                                                    ACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAG                                          <  1:700493/101‑1                                                                    ACCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAG                                          <  2:1134031/101‑1                                                                     CCCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGC                                         >  1:1217197/1‑101                                                                      CCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCA                                        <  1:1440051/101‑1                                                                      CCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCA                                        >  2:110411/1‑101                                                                      CCCAGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTACGAATAATTTGTTAAGCATAGCA                                        <  2:1119655/101‑1                                                                         AGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGA                                     >  2:1716819/1‑101                                                                         AGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGA                                     >  2:1172054/1‑101                                                                         AGTCACTTACTTATGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGA                                     >  1:983696/1‑101                                                                                 acttaTGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTA                             <  2:734467/96‑1                                                                                  cttaTGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAG                            <  1:1023753/97‑1                                                                                  cttaTGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAG                            <  1:1716825/97‑1                                                                                  cttaTGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAG                            <  2:459047/97‑1                                                                                  cttaTGTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAG                            >  2:784571/5‑101                                                                                       GTAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATT                       >  2:119967/1‑101                                                                                        TAAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTA                      >  1:329175/1‑101                                                                                         AAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGGGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTAT                     >  1:1448454/1‑101                                                                                         AAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTAT                     <  2:658643/101‑1                                                                                         AAGCTCCTGGGGCTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTAT                     <  1:1037280/101‑1                                                                                                     cTTCACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCC         <  1:1688102/100‑1                                                                                                         ACTCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGA     >  1:1710382/1‑101                                                                                                           TCGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATT   <  1:1324324/101‑1                                                                                                            CGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTT  <  1:1130758/101‑1                                                                                                            CGTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTT  <  2:857035/101‑1                                                                                                                                                                                                                  CTCAGGCAACACGCAAACGATTTACTCGTCGTATTTCAAGTTGCATGTGCTGCGGCTACGTTCGTTCACCCCAGTCACTTACTATTGTAAGCTCCTGGAG‑TTCACTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  2/55766‑55659 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcactcgTTTGCCGCCTTCCTGCAACTCGAATTATTTAGAGTCTATGAATAATTTGTTAAGCATAGCAGGAGTGGAGTAGGGATTATGCCAGCCAGGCCTTGATTT  <  70/22841‑22743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.