New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	195	= 5423	0 (0.000)	36 (0.540)	24/200	1.8	80.0%	intergenic (–/–)	–/–	–/–
	?	25	29389 =	18 (0.270)					intergenic (–/–)	–/–	–/–

CCGTTTGTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  195/5326‑5423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCA  >  25/29389‑29438                                                                                                                                                      CCGTTTGTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTC                                                 <  1:1429322/101‑1  CGTTTGTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCC                                                >  2:1105954/1‑101      TGTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTC                                            >  1:1561250/1‑101      TGTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTC                                            >  2:251878/1‑101       GTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCG                                           <  2:392906/101‑1       GTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCG                                           >  2:916272/1‑101         AAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCC                                         >  2:1494558/1‑101            AGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCT                                      <  1:1262888/101‑1            AGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCT                                      >  2:1094324/1‑101             GTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTC                                     >  1:181874/1‑101             GTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTC                                     >  1:273364/1‑101                AACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGG                                  <  2:1524187/101‑1                AACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGG                                  <  2:290357/101‑1                   CGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGA                               >  2:936073/1‑101                   CGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGA                               >  2:34976/1‑101                    GTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAG                              >  1:715571/1‑101                    GTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAG                              >  2:759569/1‑101                      TGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAG                            <  2:1363376/101‑1                          AAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTT                        >  1:950545/1‑101                           AGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTA                       <  1:459234/101‑1                            GGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAG                      <  2:255711/101‑1                             GGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGG                     <  1:1481130/101‑1                             GGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGG                     <  1:933247/101‑1                              GAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGG                    >  1:1145624/1‑101                               AATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAACACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGT                   >  2:481535/1‑101                                ATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTG                  >  2:1287465/1‑101                                ATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTG                  >  1:1173693/1‑101                                ATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTG                  >  2:1223827/1‑101                                  GATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAG                <  1:153788/101‑1                                    TAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGG              <  2:1084764/101‑1                                          TGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGTAAAa        >  2:1577483/1‑100                                             AGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGTAAAacac     <  2:1145619/101‑5                                              GTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGATAGGGTGAGGGGCAAAacacg    >  2:1523943/1‑96                                                AAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGTAAAacacgcg  <  2:812939/101‑8                                                AAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGTAAAacacgcg  >  1:527380/1‑94                                                AAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACAGTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGTAAAacacgcg  >  1:1208536/1‑94                                                                                                                                                      CCGTTTGTAAGAGTTAACCGTTGCTAAGGGAATGATAACGATGCAGTAAAAAATAATAACGATGAGGCGAACGACAAAGTTAAAAACGACTGCGGACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  195/5326‑5423 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCCCCTCGCCCCTCTGGGGAGAGGGTTAGGGTGAGGGGAAAAGGCGGCA  >  25/29389‑29438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.