New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	161	= 8872	0 (0.000)	59 (1.040) +TGGCGGCTTACGCCG	48/170	0.1	100%	intergenic (–/–)	–/–	–/–
	?	52	1 =	0 (0.000)					intergenic (–/–)	–/–	–/–

TGAATAATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  161/8773‑8872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATTCTCTAAAC  >  52/1‑100                                                                                                     |||||||||||||||                                                                                                     TGAATAATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTAT                                                                                                                    <  1:1068791/101‑1 TGAATAATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTAT                                                                                                                    <  2:326032/101‑1   AATAATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGG                                                                                                                  <  2:273830/101‑1   AATAATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGG                                                                                                                  >  1:1342783/1‑101      AATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGG                                                                                                               >  2:222803/1‑101       ATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGC                                                                                                              <  1:779514/101‑1        TCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCT                                                                                                             <  2:1247564/101‑1         CATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTT                                                                                                            <  2:1606933/101‑1          ATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTA                                                                                                           <  1:1166776/101‑1           TAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTAC                                                                                                          <  1:510103/101‑1                        TTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAA                                                                                             >  2:1424675/1‑101                         TTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGGGTTCGCCGCCGCTGAGAC                                                                                            >  2:16528/1‑101                           GTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTTAAACTT                                                                                          >  2:1090182/1‑101                            TTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTT                                                                                         >  1:1083697/1‑101                             TGTTATTAGCAGCGGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTA                                                                                        <  1:887272/101‑1                             TGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTA                                                                                        >  1:215688/1‑101                              GTTATTAGCAGCAGAACANNNNNNTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAA                                                                                       <  2:649430/101‑1                                TATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATC                                                                                     <  2:1320235/101‑1                                TATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACCCCGCCGTTGAAACTTTAATa                                                                                     >  1:1291633/1‑100                                 ATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCA                                                                                    <  2:1495471/101‑1                                     GCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCAC                                                                                <  2:338114/101‑1                                     GCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCAC                                                                                >  1:1350044/1‑101                                       AGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCC                                                                              >  1:154670/1‑101                                            AACAATGCCGTGTTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCAC                                                                         <  1:1396565/101‑1                                            AACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCAC                                                                         <  2:979806/101‑1                                              CAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTTATCATCACCCCCCAacc                                                                       >  1:1274550/1‑98                                               AATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCG                                                                      >  1:1459059/1‑101                                                     GTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGGAACTTTAATCATCACCCGCCACGCGGAACAC                                                                >  2:640491/1‑101                                                      TGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACC                                                               >  1:1570395/1‑101                                                          TAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACCCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTT                                                           >  2:249417/1‑101                                                           AGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTT                                                          >  1:835480/1‑101                                                            GTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTG                                                         <  1:717608/101‑1                                                              TAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTTCGCCGCCGTTGAAACTTTAATCATCACCCGCCCCGCGGATCACCACTTTGCC                                                       >  2:774689/1‑101                                                               AATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCc                                                      >  2:953869/1‑100                                                                ATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGA                                                     >  2:456955/1‑101                                                                  TAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATTACCCCTTTGCCGAAG                                                   >  2:1707608/1‑101                                                                      GCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCCCCCGCCACGCGGATCACCACTTTGCCGAAGTTTT                                               <  1:16528/101‑1                                                                      GCTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTT                                               <  1:165819/101‑1                                                                       ctaAAAATATTCTTTTTTCCTGGATTTTAATGGCGTCTTGCGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTT                                              <  1:1004277/98‑1                                                                       CTGAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTT                                              <  2:1274545/101‑1                                                                         GAAAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTAC                                            <  2:1083692/101‑1                                                                          AAAATAATCTTTTTCCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACC                                           <  2:641683/101‑1                                                                           AAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCCCTTTGCCGACGTTTTTACCC                                          >  2:215876/1‑101                                                                           AAATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCC                                          <  1:486449/101‑1                                                                            AATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCT                                         >  2:64094/1‑101                                                                            AATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCT                                         >  1:1387667/1‑101                                                                             ATAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGGTTTTACCCTT                                        >  2:799533/1‑101                                                                             ATAAGCTTTTTGCCTGGATTTTTATGGCGGCCTACTCCGCCGTTGAAACTTTACTCATCACCCTCCACGCGGATCACCACTTTGCCGAAGCTTTTACCCct                                        >  1:399438/1‑99                                                                              TAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCCCCACGCGGATTACCACTTTGCCGAAGTTTTTACCCTTC                                       >  2:1590398/1‑101                                                                              TAAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCCTTGAAAATTTAAACATCACCCGCCACGCGGATCACCACTTTTCCCAAATTTTTACCCTTC                                       >  2:339034/1‑101                                                                               AAGCTTTTTGCCTGGATTTTTATGGCGGCTTCCGCCGCCGTTGAAACTTTAATCACCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCA                                      <  2:943560/101‑1                                                                               AAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTTATCATCACCCGCCACGCGGATTACCACTTTTCCGAAGTTTTTACCCTTCA                                      >  2:1230358/1‑101                                                                               AAGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCA                                      >  1:1483391/1‑101                                                                                AGCTTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAAATTTAATCATCACCCGCCACGCGGATCACCACTTTTCCGAAGTTTTTACCCTTCAG                                     >  2:1177417/1‑101                                                                                   TTTTTGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAG                                  <  2:1399738/101‑1                                                                                      TTGCCTGGATTTTTATGCGGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCC                               <  2:985381/101‑1                                                                                       TGCCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCTCCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCG                              <  2:1121024/101‑1                                                                                         CCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTTATCATCACCCGCCCCGCGGGTCACCACTTTTCCGAAGGTTTTTACCTTCAGCCGGCCGAT                            >  2:874969/1‑101                                                                                         CCTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGAT                            >  1:339168/1‑101                                                                                          CTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATA                           >  1:226943/1‑101                                                                                          CTGGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATA                           >  2:236765/1‑101                                                                                          CTGGATTTTTATGGCGGCTTACGCCGCCGGTGAAAATTTAATCATCACCCGCCCCGCGGAAAACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGCTA                           >  2:1658030/1‑101                                                                                          CTGGATTTTTATGGCGGCTGACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTTCCCTTCAGCAGGCCGATA                           <  2:952416/101‑1                                                                                            GGATTTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAA                         >  1:1648298/1‑101                                                                                                TTTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACCCGGATCACACCTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAAAGTC                     >  1:1367799/1‑101                                                                                                 TTTATGGCGGTTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCT                    <  1:640496/101‑1                                                                                                 TTTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCT                    <  2:1401810/101‑1                                                                                                  TTATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTG                   <  1:1281122/101‑1                                                                                                   tagGGCGCCTTACGCCGCCTTTGAAACTTTAATCATCCCCCGCCACTCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGT                  <  2:117260/98‑1                                                                                                   TATGGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGT                  >  2:1079054/1‑101                                                                                                      GGCGGCTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGC               <  1:1100356/101‑1                                                                                                      GGCGGCTTACGCCGCCGGTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGGGGC               >  2:695286/1‑101                                                                                                           CTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATT          <  2:1387661/101‑1                                                                                                           CTTACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATT          >  1:564765/1‑101                                                                                                             TACGCCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATTCT        <  1:774694/101‑1                                                                                                                 CCGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATTCTCTAA    <  2:1016011/101‑1                                                                                                                  CGCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATTCTCTAAA   <  2:668357/101‑1                                                                                                                   GCCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATTCTCTAAAC  <  1:339894/101‑1                                                                                                     |||||||||||||||                                                                                                     TGAATAATCATAAACCACTCACCTTTGTTGTTATTAGCAGCAGAACAATGACGTGGTTAGTTAATTAAAGCTGAAAATAAGCTTTTTGCCTGGATTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  161/8773‑8872 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCGTTGAAACTTTAATCATCACCCGCCACGCGGATCACCACTTTGCCGAAGTTTTTACCCTTCAGCAGGCCGATAAACGTCTGTGGCGCATTCTCTAAAC  >  52/1‑100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.