New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	15	= 49040	0 (0.000)	60 (1.060) +GGCAATCGAGCACAA	44/170	0.0	78.3%	intergenic (–/–)	–/–	–/–
	?	190	195 =	39 (0.590)					intergenic (–/–)	–/–	–/–

AGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  15/48941‑49040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTAATGTGG  >  190/195‑293                                                                                                     |||||||||||||||                                                                                                    AGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCG                                                                                                                   >  1:356574/1‑101           AGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGC                                                                                                         >  1:1639279/1‑101             ACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCAC                                                                                                       <  2:1233586/101‑1              CGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACA                                                                                                      >  1:672614/1‑101              CGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACA                                                                                                      <  1:1142646/101‑1                AATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAAT                                                                                                    <  2:1661300/101‑1                AATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAAT                                                                                                    <  1:372306/101‑1                 ATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATG                                                                                                   <  2:37207/101‑1                   ACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCC                                                                                                 <  2:304523/101‑1                       AAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGAT                                                                                             <  2:297824/101‑1                          ATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCG                                                                                          >  2:1323922/1‑101                            AAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCATGCCGAATCCGGCAGTCCAGCACAATAACTGATGCGAC                                                                                        >  2:1022197/1‑101                            AAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGAC                                                                                        <  2:394221/101‑1                               CGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCT                                                                                     >  1:1699405/1‑101                               CGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCT                                                                                     >  1:642194/1‑101                               CGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCT                                                                                     >  2:593975/1‑101                                GTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTG                                                                                    <  1:813316/101‑1                                    GGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGC                                                                                >  1:934079/1‑101                                     GGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCG                                                                               <  1:378582/101‑1                                      GGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGT                                                                              >  2:394359/1‑101                                        TAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGCTAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCT                                                                            >  2:1043168/1‑101                                        TAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCT                                                                            >  2:8117/1‑101                                         AAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTT                                                                           <  2:18797/101‑1                                          AGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGTTAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTA                                                                          <  1:706082/101‑1                                          AGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTA                                                                          <  2:291036/101‑1                                          AGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTA                                                                          <  1:705552/101‑1                                           GGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCGGGATAAGGCATTCACGCCGCAGCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTAT                                                                         <  2:30890/101‑1                                           GGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTAT                                                                         <  2:496124/101‑1                                            GATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATC                                                                        <  2:477348/101‑1                                              TTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAG                                                                      <  2:529197/101‑1                                                 cTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCC                                                                   >  2:549896/2‑101                                                  TGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCT                                                                  >  1:786720/1‑101                                                   GTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTA                                                                 >  2:793079/1‑101                                                    TTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTAC                                                                <  2:672609/101‑1                                                        TCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAA                                                            <  2:1345358/101‑1                                                         CGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATGGAGCACAATGCCTGATGGGACGCTGCCGCGTCTTATCAGGCCTACGAGAG                                                           >  2:869306/1‑101                                                         CGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAG                                                           >  1:1278785/1‑101                                                           CAGCAAGCCACCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCT                                                         <  2:431341/101‑1                                                            AGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTA                                                        <  2:357399/101‑1                                                            AGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTA                                                        <  1:1298703/101‑1                                                              CAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAAT                                                      <  1:1712958/101‑1                                                                   CATCCAGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCA                                                 <  1:904762/101‑1                                                                        AGGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGC                                            >  2:161403/1‑101                                                                         GGCCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCT                                           <  1:334751/101‑1                                                                           CCGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGG                                         <  1:852933/101‑1                                                                            CGGATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGT                                        >  1:520121/1‑101                                                                              GATAAGGCATTCACGCCGCATCCGGCAATCGAGCCCAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAA                                      <  2:382118/101‑1                                                                               ATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGTTGGTAAT                                     <  1:1043173/101‑1                                                                               ATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAAT                                     >  1:888257/1‑101                                                                               ATAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAAT                                     >  2:1015531/1‑101                                                                                TAAGGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATG                                    >  1:1613904/1‑101                                                                                   GGCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCG                                 >  1:416171/1‑101                                                                                    GCATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGT                                >  1:1194782/1‑101                                                                                      ATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAA                              >  2:25565/1‑101                                                                                      ATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAA                              >  2:115205/1‑101                                                                                      ATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAA                              >  1:196812/1‑101                                                                                      ATTCACGCCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAA                              <  1:1512834/101‑1                                                                                             CCGCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTT                       <  2:1613898/101‑1                                                                                               GCATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGG                     <  2:1220077/101‑1                                                                                                 ATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCG                   >  1:1344481/1‑101                                                                                                 ATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCG                   >  1:1232099/1‑101                                                                                                 ATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCG                   >  1:1380648/1‑101                                                                                                 ATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCG                   <  1:593980/101‑1                                                                                                 ATCCGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGACTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCG                   >  1:234817/1‑101                                                                                                    CGGCAATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAG                >  1:921139/1‑101                                                                                                        AATCGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCG            >  1:751293/1‑101                                                                                                           CGAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCT         <  2:487051/101‑1                                                                                                            GAGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTA        >  1:79599/1‑101                                                                                                             AGCACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTAA       >  1:175713/1‑101                                                                                                               CACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTAATG     <  1:1080833/101‑1                                                                                                               CACAATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTAATG     >  1:1137718/1‑101                                                                                                                  AATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTAATGTGG  >  2:841585/1‑101                                                                                                     |||||||||||||||                                                                                                    AGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  15/48941‑49040 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACGAAAGCTAATCATCACGCGCTGGTAATGTCGTAATCCATTTGGCGCAGCGCGTCTAATGTGG  >  190/195‑293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.