New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 142 = 112210 (0.000)36 (0.840)
+GCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGC
27/128 0.4 83.6% intergenic (–/–) –/– –/–
?74 7985 = 22 (0.330)intergenic (–/–) –/– –/–

GATCTAACAGCCTGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  142/11128‑11221
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTG  >  74/7985‑8082
                                                                                              ||||||||||||||||||||||||||||||||||||                                                                                                  
GATCTAACAGCCTGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAG                                                                                                                                 <  1:358549/101‑1
   CTAACAGCCTGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGT                                                                                                                              >  2:23543/1‑101
    TAACAGCCTGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTC                                                                                                                             <  2:768007/101‑1
        AGCCTGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCAT                                                                                                                         <  1:674968/101‑1
            TGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGG                                                                                                                     <  1:1262647/101‑1
            TGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGGGTTGCTGACAAGCGATTGATTTTGTAGGGCTGATAAGACGCGGCAGCGTCGCATCAag                                                                                                                     >  1:715012/1‑99
               AAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCAT                                                                                                                  <  2:1594352/101‑1
               AAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCAT                                                                                                                  <  1:773742/101‑1
                AGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATC                                                                                                                 >  1:1442991/1‑101
                     CGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCA                                                                                                            >  1:1049678/1‑101
                       CCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACC                                                                                                          >  1:45489/1‑101
                        CCGTTGAGCTGCGCCAGTGGCTGGAAGAGGGGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCG                                                                                                         >  2:198599/1‑101
                            TGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATG                                                                                                     <  2:111627/101‑1
                              AGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCC                                                                                                   >  2:1161871/1‑101
                                 TGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGA                                                                                                <  1:1520039/101‑1
                                  GCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGAT                                                                                               <  1:870053/101‑1
                                  GCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGAT                                                                                               <  1:600351/101‑1
                                    GCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGC                                                                                             <  2:1038368/101‑1
                                            CTGGAAGATGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCAGCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAA                                                                                     <  1:1034894/101‑1
                                              GGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACG                                                                                   >  2:1555076/1‑101
                                              GGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACG                                                                                   <  1:1075347/101‑1
                                                  GAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTT                                                                               <  2:179745/101‑1
                                                  GAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTT                                                                               <  1:1430101/101‑1
                                                   AGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTA                                                                              >  1:1490715/1‑101
                                                   AGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTA                                                                              >  2:710072/1‑101
                                                      TGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCATCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCC                                                                           <  2:359510/101‑1
                                                      TGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCC                                                                           >  2:1007791/1‑101
                                                      TGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCC                                                                           <  1:68293/101‑1
                                                         TGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTC                                                                        >  2:567728/1‑101
                                                            TGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTA                                                                     <  1:1472729/101‑1
                                                            TGAAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCACCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTA                                                                     <  2:715007/101‑1
                                                              AAAAGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACA                                                                   >  2:1139970/1‑101
                                                                 AGCGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATG                                                                <  2:977540/101‑1
                                                                   CGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCC                                                              >  2:979399/1‑101
                                                                   CGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCC                                                              >  2:1260500/1‑101
                                                                   CGATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCC                                                              >  1:1467216/1‑101
                                                                    GATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCT                                                             <  2:45489/101‑1
                                                                     ATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTG                                                            >  2:339868/1‑101
                                                                     ATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTG                                                            >  1:953484/1‑101
                                                                     ATTGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGGGAAAGCCTTATCCGTCCAACAATGCCTG                                                            >  1:244228/1‑101
                                                                       TGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAT                                                          >  2:1366737/1‑101
                                                                       TGATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGAT                                                          <  2:390677/101‑1
                                                                        GATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATA                                                         <  1:1106631/101‑1
                                                                        GATTTTGTAGGCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATA                                                         >  1:326683/1‑101
                                                                                  GCCTGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTG                                               <  1:1208055/101‑1
                                                                                     TGATAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGA                                            >  1:1528030/1‑101
                                                                                        TAAGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAAC                                         <  1:915231/101‑1
                                                                                          AGACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGG                                       >  2:232879/1‑101
                                                                                           GACGCGGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGA                                      >  1:1424474/1‑101
                                                                                              GCGGCAGCGTCGCTTCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTC                                   <  1:1348111/101‑1
                                                                                                GGCAGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAG                                 >  1:1320703/1‑101
                                                                                                   AGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGC                              >  1:775377/1‑101
                                                                                                   AGCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGC                              >  1:283344/1‑101
                                                                                                    GCGTCGCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCC                             >  2:832288/1‑101
                                                                                                         GCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGAT                        <  2:1107614/101‑1
                                                                                                         GCATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGAT                        <  2:1103666/101‑1
                                                                                                           ATCAGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCA                      >  1:1270168/1‑101
                                                                                                              AGGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCG                   <  1:1606622/101‑1
                                                                                                              AGGCATCGTGCACCAAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCG                   >  2:543334/1‑101
                                                                                                               GGCATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGC                  >  2:624893/1‑101
                                                                                                                  ATCGTGCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTG               >  1:1694255/1‑101
                                                                                                                       GCACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGAT          >  1:266886/1‑101
                                                                                                                        CACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATA         >  1:575017/1‑101
                                                                                                                        CACCGAATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATA         <  2:1049673/101‑1
                                                                                                                             AATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGC    >  1:1439872/1‑101
                                                                                                                              ATGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCT   >  1:64049/1‑101
                                                                                                                               TGCCGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTG  <  1:1366743/101‑1
                                                                                              ||||||||||||||||||||||||||||||||||||                                                                                                  
GATCTAACAGCCTGAAAGCCGCGCCCGTTGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCTGATAAGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  142/11128‑11221
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGGATGCGGCGTGAACGCCTTATCCGTCCTACAATGCCTGATATACGGCATTGTGAAACGGACTCAGCGCCAGGATCACCGCCTGGTGATAGACGCTG  >  74/7985‑8082

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.