New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 13 = 521980 (0.000)52 (0.820)
+AAAAT
41/190 0.7 71.8% intergenic (–/–) –/– –/–
?28 36755 = 43 (0.650)intergenic (–/–) –/– –/–

CCTGATTGCATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  13/52099‑52198
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGCTATGCTTATCAGGCCTACATAGTCCCTGCAATATATTGAATTAGCAAGGTTTTGTAGGC  >  28/36755‑36825
                                                                                                    |||||                                                                       
CCTGATTGCATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCA                                                                             >  2:997347/1‑101
 CTGATTGCATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAA                                                                            >  1:900823/1‑101
  TGATTGCATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAA                                                                           <  1:32526/101‑1
  TGATTGCATTGATGATTTGCCATTAAGCACTTCAGCAATAATAACGCAAAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAA                                                                           <  2:304252/101‑1
      TGCATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTG                                                                       >  1:425538/1‑101
        CATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCC                                                                     >  2:1480511/1‑101
         ATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCT                                                                    <  1:957933/101‑1
         ATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCT                                                                    >  2:647256/1‑101
         ATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCT                                                                    >  2:545255/1‑101
            GATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGAT                                                                 <  2:569198/101‑1
             ATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATG                                                                >  2:239053/1‑101
                ATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGC                                                             >  1:170099/1‑101
                         TAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTAT                                                    <  2:1433212/101‑1
                         TAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTAT                                                    <  1:345424/101‑1
                            GCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAG                                                 <  2:1102134/101‑1
                              ACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGC                                               >  1:1448233/1‑101
                               CTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCC                                              >  2:901002/1‑101
                               CTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCC                                              <  1:1400716/101‑1
                                TTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCT                                             <  1:998541/101‑1
                                 TCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTA                                            <  1:1543445/101‑1
                                  CAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAC                                           >  2:1553637/1‑101
                                   AGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAAGGCAAAATTGCCTGACGTGCTAGTCGTATCAGTCCTACA                                          >  2:1024530/1‑101
                                   AGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACA                                          <  1:327700/101‑1
                                     CAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATA                                        >  1:1053689/1‑101
                                     CAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATA                                        <  2:350377/101‑1
                                      AATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAa                                       >  1:1124887/1‑100
                                      AATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAa                                       >  2:553642/1‑100
                                      AATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAa                                       <  2:1538889/101‑2
                                      AATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAa                                       >  1:1394327/1‑100
                                        TAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATC                                     <  1:1072426/101‑1
                                               GCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAA                              >  1:874598/1‑101
                                                CATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAAT                             >  2:1043231/1‑101
                                                CATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAAT                             <  2:685506/101‑1
                                                  TAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATct                           >  2:206661/1‑99
                                                    AAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTAT                         >  1:1351094/1‑101
                                                     AAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATT                        <  2:1304206/101‑1
                                                     AAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATT                        >  2:1349194/1‑101
                                                       AAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGA                      <  1:1163119/101‑1
                                                        AAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAA                     <  2:643929/101‑1
                                                         AGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAAT                    <  2:1594821/101‑1
                                                           CGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTt                  >  1:1249661/1‑100
                                                               CCAGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCAt              <  2:1333760/101‑2
                                                                 AGTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCAtgt            >  2:800756/1‑98
                                                                  GTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATctgcatgtt           >  2:734213/1‑92
                                                                  GTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCAtgtt           <  2:510924/101‑5
                                                                  GTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCAtgtt           >  2:489250/1‑97
                                                                  GTAAACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCAtgtt           >  2:726437/1‑97
                                                                     AACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTT        >  2:748482/1‑101
                                                                      ACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTG       >  1:1156837/1‑101
                                                                      ACTGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTG       <  1:1154187/101‑1
                                                                        TGACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTA     >  2:1285674/1‑101
                                                                         GACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAG    <  1:1559448/101‑1
                                                                         GACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAG    <  2:1124882/101‑1
                                                                         GACCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAG    <  2:23513/101‑1
                                                                           CCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGC  <  2:641059/101‑1
                                                                           CCCGCTCGAGACTGATTACAAACGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATAATCTCTGCAATCTATTGAATTTGCATGTTTTTGTAGGC  >  2:1364166/1‑101
                                                                                                    |||||                                                                       
CCTGATTGCATTGATGATTTGGCATTAAGCACTTCAGCAATAATAACGCATAAAAAAAGCGGGCCAGTAAACTGACCCGCTCGAGACTGATTACAAACGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  13/52099‑52198
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCTGATGCGCTATGCTTATCAGGCCTACATAGTCCCTGCAATATATTGAATTAGCAAGGTTTTGTAGGC  >  28/36755‑36825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.