New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	129	1 =	0 (0.000)	27 (0.410)	21/200	2.5	36.7%	intergenic (–/–)	–/–	–/–
	?	168	3311 =	93 (1.400)					intergenic (–/–)	–/–	–/–

GTGGTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  129/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTAAACGTCTTATCCGGCCTACGCCA  >  168/3311‑3349                                                                                                                                             GTGGTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTT                                        <  1:828514/101‑1  TGGTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTG                                       <  1:313291/101‑1    GTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCC                                     <  2:988515/101‑1    GTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCC                                     >  1:74425/1‑101    GTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCC                                     >  1:968868/1‑101     TGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCG                                    >  2:1045323/1‑101        CATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGAT                                 <  1:1150660/101‑1        CATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGAT                                 <  1:263935/101‑1           CGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCG                              <  1:336025/101‑1           CGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCG                              <  1:884053/101‑1            GTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGG                             <  2:502612/101‑1            GTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGG                             >  1:447045/1‑101             TCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGC                            <  2:440641/101‑1              CGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCG                           <  1:225089/101‑1              CGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCG                           <  2:919513/101‑1                   TTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAAC                      >  1:967386/1‑101                   TTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAAC                      <  1:182356/101‑1                   TTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAAC                      <  1:368557/101‑1                        CGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTT                 >  2:1425531/1‑101                          TGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTAT               <  1:1573472/101‑1                             AGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCG            <  2:1074335/101‑1                             AGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCG            >  1:300661/1‑101                              GTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGG           >  1:367367/1‑101                                  ACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTA       <  2:1330190/101‑1                                     AGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGa    >  1:457666/1‑100                                       GACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGatt  >  1:70518/1‑98                                       GACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGatt  >  1:772/1‑98                                                                                                                                             GTGGTGCCATCGTCGAGTTTTAGCGTGAAGTGCACCAGGACGGCGCTATTGCTCTGTACAGATTCAGACATGCAGGTTTGCTCTTATATTTAAGGATTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  129/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGCCGGATGCGGCGTAAACGTCTTATCCGGCCTACGCCA  >  168/3311‑3349

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.