New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | 115 | = 9626 | 77 (1.160) | 34 (0.590) +GTTCGGCAACGGC |
28/174 | 1.1 | 44.4% | intergenic (–/–) | –/– | –/– |
? | 150 | = 3697 | 21 (0.320) | intergenic (–/–) | –/– | –/– |
ACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 115/9536‑9626 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATGGTGCAC < 150/3697‑3651 ||||||||||||| aacggTTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAAC < 1:760579/96‑1 acggTTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCCACG > 2:1412568/5‑101 TTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTG > 1:1424063/1‑101 TGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGT < 1:311449/101‑1 GTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTA > 2:1159575/1‑101 TAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAG > 1:855526/1‑101 TAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAG < 2:1016366/101‑1 AGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGG < 2:738775/101‑1 cgTGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCGCCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCat < 2:46740/99‑3 ATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATG < 2:904323/101‑1 ATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATG > 1:1426906/1‑101 ATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATA > 2:1625374/1‑101 ATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATA < 1:1585827/101‑1 AAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAG < 1:1262820/101‑1 AGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGA > 1:123806/1‑101 CAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGcaa > 2:1235825/1‑98 CAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGcaa < 2:1426900/101‑4 CAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGcaa > 2:76891/1‑98 AAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCGcaag > 1:516591/1‑97 AGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGC < 1:1522823/101‑1 GTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTC > 2:153343/1‑101 GTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTC > 2:668063/1‑101 CGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGC < 2:1550874/101‑1 ATCAGGCATCGTGCACCGATTGCCGGATGCGGGGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATC > 2:759100/1‑101 ATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATC > 2:838940/1‑101 AGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGG < 1:1159580/101‑1 GGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGC < 1:1454476/101‑1 GCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCA < 1:372131/101‑1 CATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCAT > 1:1105396/1‑101 CGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCCTCAGGCATCGT > 2:705616/1‑101 CGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCATCGT < 1:178788/101‑1 GTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCATCGTG < 2:1078014/101‑1 TGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCATCGTGC > 1:6044/1‑101 GCACCGATTGGCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCATCGTGCA < 1:1425300/101‑1 GCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCATCGTGCA < 2:1048544/101‑1 CACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTTCGGCAACGGCTGTAGGCATGATAAGACGCG‑CAAGCGTCGCATCAGGCATCGTGCAC < 1:982139/101‑1 ||||||||||||| ACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCGTGCACCGATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 115/9536‑9626 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCATGGTGCAC < 150/3697‑3651 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |