New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	115	8511 =	0 (0.000)	65 (0.980)	53/200	0.3	100%	intergenic (–/–)	–/–	–/–
	?	222	= 1443	0 (0.000)					intergenic (–/–)	–/–	–/–

CAGAAAAGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  115/8610‑8511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTC  <  222/1443‑1347                                                                                                                                                                                                       CAGAAAAGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAAT                                                                                                  <  2:1024570/101‑1      AAGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACT                                                                                             >  2:608573/1‑101      AAGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACT                                                                                             <  2:1225717/101‑1      AAGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACT                                                                                             >  1:425383/1‑101       AGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACTGGAAATAGGGAATGTACTG                                                                                            >  1:106121/1‑101          TTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACC                                                                                         >  2:30035/1‑101           TGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCC                                                                                        >  1:1460547/1‑101             CTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCA                                                                                      <  2:811398/101‑1             CTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCA                                                                                      <  1:1138550/101‑1               CCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAA                                                                                    >  1:1625979/1‑101                CCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAA                                                                                   >  1:1633041/1‑101                CCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAA                                                                                   >  2:1480805/1‑101                 CTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAA                                                                                  >  1:631469/1‑101                 CTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAA                                                                                  >  2:1361498/1‑101                  TATCTTCGCTCGGTCTACGACGTGCTGGTCCGGCGCTTAGGCGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAG                                                                                 <  1:140282/101‑1                   ATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGT                                                                                >  1:1557143/1‑101                    TTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTT                                                                               <  1:279339/101‑1                       TCGCCTGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGA                                                                            <  2:1400278/101‑1                        CGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGAC                                                                           <  1:1087794/101‑1                        CGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGAC                                                                           <  1:1324031/101‑1                          CCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAG                                                                         >  2:1091030/1‑101                           CCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGT                                                                        >  2:854211/1‑101                             GGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTA                                                                      >  1:666886/1‑101                                CTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAAC                                                                   <  1:1558813/101‑1                                 TACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACA                                                                  <  1:802699/101‑1                                 TACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACA                                                                  >  2:731532/1‑101                                 TACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACA                                                                  <  1:1485322/101‑1                                    GACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGA                                                               <  2:1038061/101‑1                                      CGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGG                                                             <  2:1102842/101‑1                                       GTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGC                                                            >  1:63225/1‑101                                        TGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCA                                                           <  2:431956/101‑1                                         GCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCAT                                                          >  1:390235/1‑101                                           TGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATAT                                                        <  1:43735/101‑1                                              TCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGG                                                     <  2:1100399/101‑1                                                CGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC                                                   >  2:1335190/1‑101                                                CGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC                                                   >  2:1520008/1‑101                                                CGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTC                                                   <  2:1240908/101‑1                                                 GGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCT                                                  >  2:854223/1‑101                                                    GCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGAT                                               >  2:1438364/1‑101                                                      TTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTC                                             >  2:579810/1‑101                                                           GGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATA                                        >  2:937763/1‑101                                                                   TTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTG                                >  2:592922/1‑101                                                                   TTATGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTG                                >  2:20918/1‑101                                                                      TGCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAG                             <  1:98680/101‑1                                                                       GCAGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGT                            <  1:1091035/101‑1                                                                         AGTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCA                          <  1:854228/101‑1                                                                          GTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG                         >  1:662979/1‑101                                                                          GTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG                         >  1:177431/1‑101                                                                          GTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG                         >  2:475252/1‑101                                                                          GTACTGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAG                         >  1:1561233/1‑101                                                                              TGCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCT                     <  1:853611/101‑1                                                                               GCCTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTT                    >  1:865900/1‑101                                                                                 CTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTT                  >  1:1209434/1‑101                                                                                 CTGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTT                  >  2:1365015/1‑101                                                                                  TGCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTA                 <  1:579815/101‑1                                                                                   GCGACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAA                <  1:1495242/101‑1                                                                                     GACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATT              <  2:379135/101‑1                                                                                      ACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTT             >  1:1212455/1‑101                                                                                      ACCGGAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTT             <  2:1633035/101‑1                                                                                          GAAATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGG         <  2:390230/101‑1                                                                                            AATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCT       <  2:1267317/101‑1                                                                                             ATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTA      >  2:770126/1‑101                                                                                             ATAGGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTA      <  2:993896/101‑1                                                                                                GGGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATT   <  1:30035/101‑1                                                                                                 GGAATGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTC  <  2:770438/101‑1                                                                                                                                                                                                       CAGAAAAGTTTGCTCCCTATTTTCGCCCGGTCTACGACGTGCTGGTCCGGCGCTTAGGGGCTTCCTTTATGCAGTACTGCCTGCGACCGGAAATAGGGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  115/8610‑8511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGACCCCAAAAAGTTGGACAGTTAAACACGAGGCATATAGGTCTGATTCCGATATTCAATTGGAGTCAGACCTTTTAATTTCAGGCTAATTC  <  222/1443‑1347

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.