New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | 114 | 12107 = | 60 (0.900) | 28 (0.620) +GGAGCACGAATGTAGGCCGGATAAGGCGTTTA |
20/136 | 1.3 | 57.9% | intergenic (–/–) | –/– | –/– |
? | 129 | = 13398 | 0 (0.000) | intergenic (–/–) | –/– | –/– |
CCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 114/12154‑12107 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGCG < 129/13398‑13302 |||||||||||||||||||||||||||||||| gtccgtgcgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGC < 1:1424975/91‑1 gtgcgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTA > 1:1059402/7‑101 gtgcgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTA > 2:680312/7‑101 cgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACAT < 2:1076751/98‑1 cgcTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACAT < 2:1399958/98‑1 cTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAA > 1:1713299/2‑101 cTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAA < 2:54462/100‑1 CCTGATGCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATT > 1:1506353/1‑101 GCGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAG < 1:1190066/101‑1 CGACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGG > 2:1325512/1‑101 ACGCTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAG < 2:449582/101‑1 CTGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTA > 2:1342351/1‑101 TGACGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAA > 1:492599/1‑101 CGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATG < 1:879995/101‑1 CGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATG < 1:777709/101‑1 GTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGG > 1:1328408/1‑101 GTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGG > 2:688900/1‑101 GTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGG < 2:1102379/101‑1 TCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGA < 1:1221733/101‑1 CTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGAT < 1:1495479/101‑1 TATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCA < 1:1304281/101‑1 AGGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTA < 2:1126662/101‑1 GGCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTAC < 1:680317/101‑1 GCCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACC < 2:1706166/101‑1 CCTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCC > 1:913274/1‑101 CTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCA > 1:1333419/1‑101 CTACGGGAGCACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCA > 2:970022/1‑101 CGGGAGCACGAATGGAGGCCGGATAAGGCTTTTACGCCGCATCCGGGAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGC > 2:1681644/1‑101 ACGAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATT < 2:690910/101‑1 AATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGG < 2:1616447/101‑1 ATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGG > 2:104186/1‑101 TGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGC < 2:976927/101‑1 GGCCGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTT > 2:1273112/1‑101 CGGATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGC > 1:437699/1‑101 ATAAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGG > 1:1532590/1‑101 AAGGCGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGAT > 1:1163454/1‑101 CGTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCG < 2:1049169/101‑1 GTTTACGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGC > 2:455576/1‑101 TTTACGCCGCATCCGGCAGCCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGCG > 1:472719/1‑101 |||||||||||||||||||||||||||||||| CCGGCACATTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < 114/12154‑12107 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGCCGCATCCGGCAGTCATGCGCTACATAAATTTTTCAGGAGCTAATAATGGATCATCTACCCATGCCGAAATTCGGGCCGTTGGCCGGATTGCGCG < 129/13398‑13302 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |