New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	110	1 =	0 (0.000)	67 (1.200) +GGTGATGCTGCCAACT	54/168	0.1	100%	intergenic (–/–)	–/–	–/–
	?	223	= 698	0 (0.000)					intergenic (–/–)	–/–	–/–

AAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  110/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTA  <  223/698‑620                                                                                                     ||||||||||||||||                                                                                AAGCGCGTTTTAATGAGTTTATCAGTGAACTTGCCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAG                                                                                                <  2:18780/101‑1   GCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGT                                                                                              >  1:878296/1‑101      CGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGAT                                                                                           <  1:27346/101‑1      CGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGAT                                                                                           >  1:215038/1‑101      CGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGAT                                                                                           <  2:501337/101‑1         TTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCT                                                                                        >  1:1014609/1‑101                AGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACT                                                                                 <  1:1051404/101‑1                 GTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTT                                                                                <  1:745491/101‑1                 GTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTT                                                                                >  2:1331040/1‑101                   TTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTAC                                                                              >  1:1601148/1‑101                    TATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACT                                                                             >  1:904043/1‑101                     ATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTG                                                                            <  1:197114/101‑1                      TCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGA                                                                           >  1:1497646/1‑101                       CAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGAT                                                                          <  1:2685/101‑1                        AGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATT                                                                         <  2:1632426/101‑1                          TGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTA                                                                       >  1:221271/1‑101                            AACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGT                                                                     >  1:568316/1‑101                             ACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTG                                                                    <  1:950893/101‑1                              CTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGT                                                                   >  1:829438/1‑101                               TTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTA                                                                  <  2:886216/101‑1                                   CCGTCGAATGCCCCAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                              <  2:1601142/101‑1                                   CCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                              <  1:1331046/101‑1                                    CGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                             >  1:656113/1‑101                                     GTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGG                                                            >  1:1492622/1‑101                                      TCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT                                                           <  1:993652/101‑1                                       CGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTG                                                          >  1:1010023/1‑101                                         AATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                        <  2:401918/101‑1                                         AATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                        <  1:604313/101‑1                                         AATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                        <  1:1207276/101‑1                                         AATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTT                                                        >  1:208638/1‑101                                            GCCACAACGCAGGGGCCGAATAATGACGATTGCTGAGCGAATTCATAATGATGGATAGGGGATGCGCCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                     <  2:1298555/101‑1                                            GCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTT                                                     <  2:650064/101‑1                                             CCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTG                                                    <  2:922463/101‑1                                              CACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                   >  2:1674494/1‑101                                               ACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAG                                                  <  2:1609655/101‑1                                                CAACACAGGGAGCTAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGG                                                 <  2:878291/101‑1                                                       GGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCA                                          <  2:1010018/101‑1                                                         GAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGT                                        <  2:1021675/101‑1                                                           GCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                                      <  1:1674500/101‑1                                                            CGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC                                     >  1:248859/1‑101                                                            CGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGC                                     >  2:1217540/1‑101                                                             GAATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                    <  2:560615/101‑1                                                              AATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                   <  1:834922/101‑1                                                               ATAATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTC                                  >  1:563305/1‑101                                                                 AATGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTG                                <  2:583399/101‑1                                                                   TGACGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                              >  1:289330/1‑101                                                                      CGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT                           <  1:1573611/101‑1                                                                      CGATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCT                           >  2:1198352/1‑101                                                                       GATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA                          <  1:1129622/101‑1                                                                       GATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA                          >  2:1513044/1‑101                                                                       GATTGCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA                          <  2:215038/101‑1                                                                           GCAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG                      <  1:90391/101‑1                                                                            CAGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGC                     >  2:1685413/1‑101                                                                             AGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                    >  2:1199818/1‑101                                                                             AGAGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTACGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT                    <  1:1029768/101‑1                                                                               AGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGT                  >  2:1426431/1‑101                                                                               AGCGAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGT                  >  2:841081/1‑101                                                                                  GAATTCATATTGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC               <  1:1710995/101‑1                                                                                  GAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC               >  2:235978/1‑101                                                                                  GAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC               >  1:902046/1‑101                                                                                  GAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC               >  2:404137/1‑101                                                                                  GAATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC               <  2:563300/101‑1                                                                                   AATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCT              >  1:853599/1‑101                                                                                    ATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC             >  1:479720/1‑101                                                                                    ATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC             >  2:1306910/1‑101                                                                                    ATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC             >  1:941142/1‑101                                                                                    ATTCATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTC             >  1:1615397/1‑101                                                                                       CATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTG          >  1:1413958/1‑101                                                                                       CATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTG          <  2:568311/101‑1                                                                                        ATAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGT         >  2:82333/1‑101                                                                                         TAATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTT        >  2:930703/1‑101                                                                                           ATGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCA      >  2:405439/1‑101                                                                                            TGATGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAG     >  1:737257/1‑101                                                                                               TGGATAGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTA  >  1:1663186/1‑101                                                                                                     ||||||||||||||||                                                                                AAGCGCGTTTTAATGAGTTTATCAGTGAACTTACCCGTCGAATGCCACAACACAGGGAGCGAATAATGACGATTGCAGAGCGAATTCATAATGATGGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  110/100‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTA  <  223/698‑620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.