New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	11	30149 =	198 (2.970)	57 (1.020)	33/168	0.6	40.7%	intergenic (–/–)	–/–	–/–
	?	93	17 =	0 (0.000)					intergenic (–/–)	–/–	–/–

TGAATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  11/30263‑30149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgagctaacgacccACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATCAC  >  93/17‑116                                                                                                                                                                                                                         TGAATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAAC                                                                                                                    >  1:831750/1‑101  GAATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACT                                                                                                                   <  2:299146/101‑1   AATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTG                                                                                                                  >  1:1232917/1‑101                CGCCTTTAGGGCGCTTTTTTACAGTGGTGGGTCGCGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCA                                                                                                     <  2:140125/101‑1                 GCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAt                                                                                                    >  2:621859/1‑100                  CCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAta                                                                                                   <  2:413986/101‑3                  CCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAta                                                                                                   >  2:289863/1‑99                   CTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtat                                                                                                  >  2:495618/1‑98                   CTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtat                                                                                                  <  1:1590729/101‑4                   CTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtat                                                                                                  >  1:825699/1‑98                    TTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatg                                                                                                 >  1:1250823/1‑97                    TTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatg                                                                                                 >  2:194169/1‑97                    TTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatg                                                                                                 >  2:1564922/1‑97                      TAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatggg                                                                                               >  1:1632880/1‑95                       AGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatgggt                                                                                              <  2:1357280/101‑8                        GGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatgggtg                                                                                             <  1:60730/101‑9                         GGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatgggggt                                                                                            >  2:1481781/1‑92                          GCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCAtatgggtgtt                                                                                           <  2:416038/101‑11                             accttagcgATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCT                                                                                        >  1:1067827/10‑101                               cttagcgATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTT                                                                                      >  2:1083132/8‑101                                ttagcgATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTC                                                                                     >  2:180353/7‑101                                ttagcgATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTC                                                                                     <  1:409623/95‑1                                 tagcgATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCCCTTTTTCGTTGCTTTCG                                                                                    <  2:875926/96‑1                                 tagcgATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCG                                                                                    <  2:651426/96‑1                                 tagcgATTGGTGGGTCGTGCAGAATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCG                                                                                    <  1:1404330/96‑1                                      ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTG                                                                               <  1:1083137/101‑1                                      ATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGAACCACTTTTTCGTTGCTTTCGGTTTG                                                                               >  2:577942/1‑101                                           TGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGA                                                                          <  1:378946/101‑1                                             GGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATA                                                                        <  1:754027/101‑1                                             GGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATA                                                                        <  2:465966/101‑1                                             GGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATA                                                                        >  1:1052356/1‑101                                                CGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCC                                                                     >  2:184116/1‑101                                                 GTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCC                                                                    >  2:342647/1‑101                                                  TGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCG                                                                   >  1:582653/1‑101                                                  TGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCG                                                                   >  1:911804/1‑101                                                         TTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAAC                                                            <  1:530112/101‑1                                                         TTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAAC                                                            <  1:558328/101‑1                                                            GAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGC                                                         >  1:873336/1‑101                                                            GAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGC                                                         >  1:1443402/1‑101                                                                   CGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATAT                                                  <  2:1161597/101‑1                                                                      CCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATACCGTGGCAACGGCGGCATATATT                                               >  2:1631339/1‑101                                                                         ATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACT                                            >  1:209181/1‑101                                                                           TGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGA                                          >  1:1089401/1‑101                                                                              TTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTT                                       <  2:658415/101‑1                                                                               TAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTC                                      <  1:342647/101‑1                                                                                 AAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAG                                    <  1:371946/101‑1                                                                                 AAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAG                                    >  2:1101974/1‑101                                                                                 AAAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAG                                    <  1:1628815/101‑1                                                                                  AAGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGA                                   >  1:328432/1‑101                                                                                   AGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTTAGAC                                  >  1:1515348/1‑101                                                                                   AGTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGAC                                  >  1:848273/1‑101                                                                                    GTCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACT                                 >  2:320686/1‑101                                                                                     TCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTT                                <  2:273946/101‑1                                                                                     TCAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTT                                <  2:1107437/101‑1                                                                                      CAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTG                               <  2:1526689/101‑1                                                                                      CAACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTG                               <  1:577947/101‑1                                                                                       AACTGCTCTACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGA                              >  1:1287769/1‑101                                                                                               TACCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACA                      >  2:494733/1‑101                                                                                                 CCAACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAA                    >  2:347615/1‑101                                                                                                   AACTGAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAA                  <  2:810883/101‑1                                                                                                       GAGCTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTC              >  1:139313/1‑101                                                                                                          CTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGAT           <  1:1033137/101‑1                                                                                                          CTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGAT           <  2:209181/101‑1                                                                                                          CTAACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGAT           <  2:1649297/101‑1                                                                                                            AACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGC         <  1:388938/101‑1                                                                                                             ACGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGaa        <  1:489829/101‑3                                                                                                              CGACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAG       >  1:1081822/1‑101                                                                                                               GACCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGA      >  2:315957/1‑101                                                                                                                 CCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATC    >  1:303253/1‑101                                                                                                                 CCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATC    >  1:1547118/1‑101                                                                                                                 CCCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATC    >  1:1399473/1‑101                                                                                                                  CCACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATCA   >  2:216855/1‑101                                                                                                                   CACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATCAC  <  2:911799/101‑1                                                                                                                                                                                                                         TGAATAGCAAAAAAGCGCCTTTAGGGCGCTTTTTTACATTGGTGGGTCGTGCAGGATTCGAACCTGCGACCAATTGATTAAAAGTCAACTGCTCTACCAACTGAGCTAACGACCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  11/30263‑30149 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgagctaacgacccACTTTTTCGTTGCTTTCGGTTTGTTTGATATCCCGTGGCAACGGCGGCATATATTACTGATTTCAGACTTGAGCGCAACAAAAATTTCGATGCAGATCAC  >  93/17‑116

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.