New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	108	1 =	0 (0.000)	61 (0.960) +CCTGC	45/190	0.4	100%	intergenic (–/–)	–/–	–/–
	?	11	1 =	0 (0.000)					intergenic (–/–)	–/–	–/–

AAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  108/99‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGTTAT  >  11/1‑98                                                                                                    |||||                                                                                                   AAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCC                                                                                                       <  1:413526/101‑1  AGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCT                                                                                                      <  1:175651/101‑1           CGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACC                                                                                             <  1:222653/101‑1                 CAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATC                                                                                       <  1:498572/101‑1                    CCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTCCCAGTACCATCATCTGC                                                                                    >  2:1546825/1‑101                     CAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCA                                                                                   >  2:494692/1‑101                     CAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCA                                                                                   >  1:1334765/1‑101                       ATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGA                                                                                 >  1:672428/1‑101                       ATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGCCGGTAATGCGCCTGCCAGTACCATCATCTGCAGA                                                                                 >  2:443013/1‑101                        TGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGAT                                                                                <  1:65798/101‑1                            GCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTC                                                                            >  1:1682486/1‑101                             CTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCG                                                                           <  2:757680/101‑1                                    AGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCA                                                                    <  2:1219976/101‑1                                     GTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAA                                                                   >  2:205888/1‑101                                     GTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAAAGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAA                                                                   >  1:1616805/1‑101                                      TACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAA                                                                  <  1:377718/101‑1                                       ACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAAT                                                                 >  2:1359760/1‑101                                        CGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATG                                                                >  2:939998/1‑101                                        CGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATG                                                                <  1:1076848/101‑1                                           GTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGAaa                                                             <  1:325897/101‑3                                            TGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACAT                                                            <  2:965113/101‑1                                            TGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAAAGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACAT                                                            <  2:1616799/101‑1                                            TGTAAACATAAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACAT                                                            <  2:289586/101‑1                                               AGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCC                                                         >  1:1046569/1‑101                                                 ACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAAAGACATGCCAT                                                       <  1:494697/101‑1                                                   ATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTTAAATGACATGCCATAC                                                     >  1:1559121/1‑101                                                   ATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATAC                                                     >  2:233111/1‑101                                                   ATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAACGGGCCTGCCAGTACCATCATCTGCAGATGGTGGCTGCTCCAATGACATGCCATAC                                                     >  2:12046/1‑101                                                        ACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACG                                                >  1:869429/1‑101                                                          CGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAA                                              <  1:180383/101‑1                                                           GGCGGGAAATAATGTGGCAGGAGAGTCCCGGCGGCAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAA                                             <  1:192745/101‑1                                                            GCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGCACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAA                                            <  2:1693078/101‑1                                                             CTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAG                                           <  2:1011598/101‑1                                                                GCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAG                                        >  2:251301/1‑101                                                                GCAATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAG                                        <  2:1376646/101‑1                                                                  AATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTG                                      >  1:1697261/1‑101                                                                  AATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTG                                      >  2:1696166/1‑101                                                                  AATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTG                                      >  1:638199/1‑101                                                                   ATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGC                                     <  1:1380830/101‑1                                                                   ATAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGC                                     <  2:473686/101‑1                                                                    TAATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGac                                    >  2:639239/1‑99                                                                     AATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCA                                   >  2:283316/1‑101                                                                      ATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAG                                  <  2:1037012/101‑1                                                                      ATGATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAG                                  <  2:1647/101‑1                                                                         ATTCCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGG                               >  1:724789/1‑101                                                                         ATTCCGGAGAACGCCGGCGGTAACGCCCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGG                               <  2:1029642/101‑1                                                                            CCGGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCAT                            <  1:6408/101‑1                                                                              GGAGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCA                          >  1:450200/1‑101                                                                                AGAATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGA                        >  1:788059/1‑101                                                                                  AATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAAT                      <  2:144538/101‑1                                                                                   ATGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATC                     >  2:1283487/1‑101                                                                                    TGCCGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCA                    <  1:956570/101‑1                                                                                    TGCCGGCGGTAATGCCCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCA                    <  1:804334/101‑1                                                                                     tccagcaGTAATGCACCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGACATCCCAAAGAAAAGCAGTGCCAGTGGCATCAGAATCAG                   <  2:185387/94‑1                                                                                       CGGCGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCT                 <  2:672423/101‑1                                                                                         GCGGTAATGCGCCTGCCAGTACCACCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTC               <  2:1261408/101‑1                                                                                          gGGTAATGCCCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCA              <  1:1224607/100‑1                                                                                          ctgaAATGCCCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCA              <  2:1258261/97‑1                                                                                          CGGTAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCA              <  2:919007/101‑1                                                                                             TAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGA           <  1:90013/101‑1                                                                                             TAATGCGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGA           >  1:496490/1‑101                                                                                                TGCCCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGG        <  2:125854/101‑1                                                                                                 gccCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGCAAGGT       <  1:1300944/98‑1                                                                                                  CGCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTG      >  1:1405646/1‑101                                                                                                   cCCTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGT     <  1:283316/100‑1                                                                                                     CTGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGTTA   >  1:1173722/1‑101                                                                                                      TGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGTTAT  <  1:205888/101‑1                                                                                                      TGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGTTAT  <  2:574369/101‑1                                                                                                      TGCCAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGTTAT  <  2:1682480/101‑1                                                                                                    |||||                                                                                                   AAGCCCAGTACGCTCACAGCCAATGACGCTGTACCAGTACGGGTGTAGACATTAAACCGGCTGGCAATAATGATTCCGGAGAATGCCGGCGGTAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  108/99‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAGTACCATCATCTGCAGATGTTCGCTGTTCAAATGACATGCCATACCAACGAAAAGCAGTGCCAGTGGCATCAGAATCAGCTTCAGGAAGGTGTTAT  >  11/1‑98

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.