New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	106	14 =	4 (0.060)	48 (0.840)	34/172	0.5	96.5%	intergenic (–/–)	–/–	–/–
	?	155	15 =	0 (0.000)					intergenic (–/–)	–/–	–/–

CAACAGCGGATGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  106/127‑14 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattgctgctgcggTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCATTGGCGAAAATTCA  >  155/15‑114                                                                                                                                                                                                                        CAACAGCGGATGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGAT                                                                                                                   <  2:236699/101‑1  AACAGCGGATGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGGTGATGCGGCTGCTGATA                                                                                                                  >  1:708368/1‑101       CGGATGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCT                                                                                                             <  2:348745/101‑1        GGATGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTG                                                                                                            <  2:836429/101‑1           TGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTG                                                                                                         >  1:620244/1‑101            GAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGC                                                                                                        >  2:900863/1‑101             AAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGGTATTGCTGCTGCG                                                                                                       >  2:711118/1‑101                            tggctgcGGCGCAACCGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCCGGTGTT                                                                                        >  2:124673/8‑101                             ggctgcGGCGCAACCGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTG                                                                                       <  2:1477771/95‑1                                  cGGCGCAACCGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCT                                                                                  <  2:1448045/100‑1                                  cGGCGCAACCGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCT                                                                                  <  1:1662560/100‑1                                   GGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTG                                                                                 >  1:961568/1‑101                                     CGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCT                                                                               >  2:1037671/1‑101                                     CGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGTGGCTGCGGCGCAACCGGCTGTTGTGGCTGCT                                                                               <  1:329720/101‑1                                      GCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGTGGCTGCGGCGCAACCGGCTGTTGTGGCTGCTG                                                                              <  1:900868/101‑1                                      GCAACCGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTTCTt                                                                              >  1:495586/1‑100                                       CAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGg                                                                             >  2:303339/1‑100                                       CAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATAATGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGa                                                                             >  1:5788/1‑100                                        AACTGGCTGTTGTGGCTGCTGATGCTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGat                                                                            <  2:609899/101‑3                                         accGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGGTGTTGCGGGTGGTGTtc                                                                           >  2:590126/4‑99                                          CTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCCGCTGCGGCGCAACCGGATGTTGCGGCTGCTGatat                                                                          <  2:1472380/101‑5                                           cGGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAG                                                                         <  1:1450874/100‑1                                            GGCTGTTGTGGCTTCTGATACTGCTGCTGCGGCGCTACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCCGCGCAACCGGTTGTTGCGGCTGCTGatattg                                                                        <  2:184815/101‑7                                            GGCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGG                                                                        <  1:968089/101‑1                                             GCTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGT                                                                       <  1:1431479/101‑1                                              gTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTT                                                                      <  2:180559/100‑1                                              CTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGgtattgtg                                                                      >  1:422127/1‑93                                              CTGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGGTGTACAGGgt                                                                      >  1:1466910/1‑99                                               TGTTGTGGCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTC                                                                     <  2:1118767/101‑1                                                      GCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGGTCAACAATT                                                              >  2:1102486/1‑101                                                      GCTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCCGCGGGGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATT                                                              >  2:275273/1‑101                                                       CTGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTG                                                             <  2:101476/101‑1                                                        TGCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGG                                                            <  1:1680622/101‑1                                                         GCTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGC                                                           <  1:124673/101‑1                                                          CTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCG                                                          <  2:852416/101‑1                                                          CTGATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGGTCAACAATTtggg                                                          >  2:1376658/1‑97                                                             ATACTGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAA                                                       >  2:1315619/1‑101                                                                 TGCGGCTGCGGCGGAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAA                                                   <  2:387506/101‑1                                                                              gAACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGA                                      >  1:268870/2‑101                                                                               AACTGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGAC                                     >  2:1676893/1‑101                                                                                actGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACC                                    <  1:1244577/98‑1                                                                                 ctGGTTGTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTTGCGTAAACAACGGTTCGTGTGGACCA                                   >  1:1440474/3‑101                                                                                       GTTGCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCC                             <  1:1272004/101‑1                                                                                          GCGGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGC                          <  1:590131/101‑1                                                                                            GGCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAA                        <  2:495581/101‑1                                                                                             GCTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAAC                       <  1:1315625/101‑1                                                                                              CTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACG                      >  1:1457227/1‑101                                                                                              CTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACG                      >  1:305396/1‑101                                                                                              CTGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACG                      >  1:1711241/1‑101                                                                                               TGCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGC                     >  1:436180/1‑101                                                                                                GCTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCT                    >  2:504440/1‑101                                                                                                GCTGATATTGCTGCTGCGGCGCAACCGGTTCTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCT                    <  2:952494/101‑1                                                                                                 CTGATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTT                   >  2:329136/1‑101                                                                                                   GATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTC                 >  1:506633/1‑101                                                                                                    ATATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCA                >  2:1346991/1‑101                                                                                                     TATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCAT               >  2:1365098/1‑101                                                                                                      ATTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCATT              >  1:1444297/1‑101                                                                                                       TTGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCATTG             >  2:970425/1‑101                                                                                                        TGCTGCTGCGGTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCATTGG            <  2:563398/101‑1                                                                                                                  GTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGGCCATCATCCAGCCACGCTTTCATTGGCGAAAATTCA  >  2:779749/1‑101                                                                                                                                                                                                                        CAACAGCGGATGAAGCAGGGTATCCTGCGGTTGTGGCGCAACTGGCTGTTGTGGCTGCTGATACTGCTGCTGCGGCGCAACCGGTTGTTGCGGCTGCTGATATTGCTGCTGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  106/127‑14 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tattgctgctgcggTGCAACCGGTTGTTGCGGCTGCTGTACAGGTTCAACAATTGGCGTAAACAACGGTTCGTGTGGACCATCATCCAGCAACGCTTTCATTGGCGAAAATTCA  >  155/15‑114

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.