New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	102	11456 =	9 (0.140)	32 (0.560) +GTGATGCTGCCAACT	31/170	0.8	89.3%	intergenic (–/–)	–/–	–/–
	?	223	= 698	0 (0.000)					intergenic (–/–)	–/–	–/–

TTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  102/11554‑11456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  223/698‑617                                                                                                    |||||||||||||||                                                                                   TTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGT                                                                                                 <  2:1078616/101‑1    TGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGAT                                                                                              >  1:1381709/1‑101          TCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCC                                                                                        <  1:88304/101‑1          TCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCC                                                                                        <  2:217101/101‑1           CTACAACATCTCGTTGATGAACTTGCGATGCCAGATACTGATTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTGCGGGGCGGCGGTGATGCTGCCA                                                                                       >  2:154678/1‑101            TACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAA                                                                                      >  1:95477/1‑101              CAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACT                                                                                    <  2:959215/101‑1                ACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTA                                                                                  <  2:1193915/101‑1                 CATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTAC                                                                                 >  2:1497409/1‑101                       GTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTT                                                                           >  2:327958/1‑101                         TGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAG                                                                         <  2:924077/101‑1                          GATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGT                                                                        <  2:1200120/101‑1                               ACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATG                                                                   <  2:733845/101‑1                                 TGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGAT                                                                 >  2:596121/1‑101                                  GGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATG                                                                <  2:1381703/101‑1                                     GATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTG                                                             >  2:1291205/1‑101                                      ATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGT                                                            <  1:318629/101‑1                                        GCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                          >  1:770180/1‑101                                        GCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTT                                                          <  2:147225/101‑1                                            GATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGA                                                      >  2:629724/1‑101                                               ACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGT                                                   >  1:1682526/1‑101                                                 TGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGCGTTTTTGAGGGGC                                                 >  2:570053/1‑101                                                         ATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGG                                         >  1:1407625/1‑101                                                           GCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCACGGTGATGCTGCCATCTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCT                                       <  2:1425557/101‑1                                                            CCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTT                                      >  2:1377056/1‑101                                                                 GATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                 >  1:711675/1‑101                                                                 GATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTT                                 <  2:1604036/101‑1                                                                   TGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTC                               <  2:722630/101‑1                                                                     gCCGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTA                             <  1:1102556/100‑1                                                                       CGAGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATC                           <  2:1251015/101‑1                                                                         AGGGCATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAG                         >  2:318237/1‑101                                                                              ATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTTTTAGCTGTC                    >  2:1538348/1‑101                                                                              ATGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTC                    >  1:1056744/1‑101                                                                               TGGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCC                   >  1:879869/1‑101                                                                                GGAAAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCC                  <  1:629729/101‑1                                                                                   AAAAGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCC               >  2:894010/1‑101                                                                                      AGTTCGGGGCCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGT            >  1:799180/1‑101                                                                                               CCGCGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACT   <  2:890635/101‑1                                                                                                CGCGTTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  2:328614/101‑1                                                                                                    |||||||||||||||                                                                                   TTCTGGTCGTCTACAACATCTCGTTGATGAACTGGCGATGCCAGATACTGCTTTTTATGCCTGGGATGCCCGAGGGCATGGAAAAAGTTCGGGGCCGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  102/11554‑11456 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTG  <  223/698‑617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.