New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 1 =0 (0.000)48 (0.780) 32/184 1.3 100% intergenic (–/–) –/– –/–
?32 = 33892 0 (0.000)intergenic (–/–) –/– –/–

CCAAATAAGCCTGATGCGCTACACTTATCAGGCCTACAAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  10/107‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcaTAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTGTACC  <  32/33892‑33793
                                                                                                                                                                                                               
CCAAATAAGCCTGATGCGCTACACTTATCAGGCCTACAAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCAT                                                                                                            >  2:1501737/1‑101
              TGCGCTACGCTTATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACG                                                                                             <  1:1432943/101‑1
                CGCTACGCTTATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAG                                                                                           <  1:367362/101‑1
                   TACGCTTATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCAC                                                                                        <  1:437035/101‑1
                      gCTTATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTT                                                                                     >  1:672387/2‑101
                      gCTTATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTT                                                                                     >  1:378897/2‑101
                       CTTATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTG                                                                                    >  1:1377510/1‑101
                         TATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTC                                                                                  >  2:77816/1‑101
                          ATCAGGCCTACGTCATATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCT                                                                                 >  1:655378/1‑101
                                 cctacgtcatATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACC                                                                           >  1:293432/11‑101
                                      gtcatATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCG                                                                      >  2:339547/6‑101
                                      gtcatATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCG                                                                      >  2:752148/6‑101
                                      gtcatATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCG                                                                      >  2:575031/6‑101
                                         atATTGCAATTTATTGAATTTGCACGAACTTGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTT                                                                   >  2:1453900/3‑101
                                          tATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTT                                                                  >  2:1139521/2‑101
                                           ATTGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTT                                                                 >  2:698120/1‑101
                                             TGCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTA                                                               >  2:1699073/1‑101
                                              GCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTAT                                                              <  2:711215/101‑1
                                              GCAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTAT                                                              >  1:1656980/1‑101
                                               CAATTTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATA                                                             >  1:32989/1‑101
                                                  ttTATTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACAT                                                          <  1:558128/99‑1
                                                  ttTATTGAATTTGCACGAACTTGTAGCCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACAT                                                          <  2:1605179/99‑1
                                                      TTGAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGAC                                                      <  2:39722/101‑1
                                                       TGAATTTGCCCGAACTTGTAGTCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACG                                                     <  2:234075/101‑1
                                                        GAATTTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGT                                                    <  2:1156882/101‑1
                                                            TTGCACGAACTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAA                                                <  2:1432542/101‑1
                                                                acgaacTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTAT                                            <  1:426153/95‑1
                                                                acgaacTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTAT                                            >  2:1650617/7‑101
                                                                 cgaacTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATG                                           >  1:65196/6‑101
                                                                 cgaacTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATG                                           <  2:1283353/96‑1
                                                                    acTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAA                                        >  1:1378715/3‑101
                                                                       TGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAAC                                     <  1:16209/101‑1
                                                                       TGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAAC                                     <  2:1677463/101‑1
                                                                       TGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAAC                                     >  2:273585/1‑101
                                                                         TAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAG                                   <  2:652988/101‑1
                                                                           GGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGC                                 <  1:1699079/101‑1
                                                                            GCCGGATAAGGCTTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCT                                <  2:441593/101‑1
                                                                             CCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTG                               <  1:1132138/101‑1
                                                                             CCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTG                               >  2:1126414/1‑101
                                                                             CCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTG                               >  1:324195/1‑101
                                                                              CGGATAAGGAGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGC                              <  1:6736/101‑1
                                                                                GATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTG                            <  2:243356/101‑1
                                                                                 ATAAGGCGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGA                           >  1:1495382/1‑101
                                                                                       CGTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCA                     <  1:548570/101‑1
                                                                                        GTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAG                    >  1:1417101/1‑101
                                                                                        GTTCACGCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAG                    >  1:869449/1‑101
                                                                                              GCCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCT              >  2:1345962/1‑101
                                                                                               CCGCATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTG             >  2:988021/1‑101
                                                                                                  CATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTT          >  1:488786/1‑101
                                                                                                   ATCCGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTT         >  2:1476359/1‑101
                                                                                                      CGGCATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTG      <  2:676576/101‑1
                                                                                                       tctATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTGT     <  2:1071511/98‑1
                                                                                                         CATAAACAACGAGCACGTTGTCTGCGTCCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTGTAC   <  2:1656974/101‑1
                                                                                                          ATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTGTAga  >  1:1071516/1‑99
                                                                                                          ATAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTGTACC  >  2:91536/1‑101
                                                                                                                                                                                                               
CCAAATAAGCCTGATGCGCTACACTTATCAGGCCTACAAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  10/107‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcaTAAACAACGAGCACGTTGTCTGCGACCCACCGCTTTTTATACATGGACGTTTAACTATGAAAAACAGGCTGCTGATCCTCAGCCTGCTGGTTTCTGTACC  <  32/33892‑33793

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.