New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	10	1 =	0 (0.000)	71 (1.070)	33/200	1.4	100%	intergenic (–/–)	–/–	–/–
	?	132	= 13049	0 (0.000)					intergenic (–/–)	–/–	–/–

CTTATCAGGCCTACAAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  10/84‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCATCA  <  132/13049‑12950                                                                                                                                                                                          CTTATCAGGCCTACAAGGTTTCTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTT                                                                                     <  2:142711/101‑1        GGCCTACAAGGTTTCTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATA                                                                              <  2:454751/101‑1          CCTACAAGGTTTCTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAAT                                                                            >  2:1037506/1‑101             acaaggtttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTG                                                                         <  1:1366654/91‑1               aaggtttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGAT                                                                       <  2:1501228/93‑1               AAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAa                                                                       <  1:1574163/101‑2               AAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAa                                                                       <  2:580362/101‑2                AGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTACACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaa                                                                      >  2:1693637/1‑99                 ggtttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTT                                                                     <  2:582932/95‑1                 ggtttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTT                                                                     >  2:1040951/7‑101                 GATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaac                                                                     <  1:492122/101‑4                 GATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaac                                                                     <  2:665959/101‑4                 GATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaac                                                                     <  1:1467429/101‑4                 GATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaac                                                                     <  2:353841/101‑4                  gtttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTG                                                                    <  1:219724/96‑1                  ATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaacc                                                                    >  2:1014446/1‑97                  ATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaacc                                                                    >  1:1255404/1‑97                  ATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaacc                                                                    <  2:90138/101‑5                  ATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaacc                                                                    >  2:1677727/1‑97                   tttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGT                                                                   >  1:904984/5‑101                    ttcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTC                                                                  >  1:1002775/4‑101                    GATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaacccc                                                                  <  1:164600/101‑7                    GATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATAAACAAAGCGCACTTTGTCAATAATCTGAaacccc                                                                  <  1:312749/101‑7                     tcTGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATCTGTCG                                                                 <  2:1535102/99‑1                       TGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGC                                                               <  1:400148/101‑1                       TGCAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGC                                                               >  2:628244/1‑101                         CAATATATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAG                                                             <  1:503918/101‑1                              TATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTT                                                        >  2:809018/1‑101                               ATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTG                                                       >  1:661198/1‑101                               ATTGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTG                                                       <  2:1554700/101‑1                                 TGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCT                                                     >  2:1093266/1‑101                                 TGAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCT                                                     <  1:954541/101‑1                                  GAATTAGCAATATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTG                                                    <  2:1160761/101‑1                                    attagcaatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCC                                                  <  2:1638700/92‑1                                    attagcaatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCC                                                  <  2:648379/92‑1                                      tagcaatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGA                                                >  1:896423/8‑101                                       agcaatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGAC                                               >  2:601995/7‑101                                       agcaatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGAC                                               >  2:3610/7‑101                                       agcaatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGAC                                               <  1:1290586/95‑1                                         caatATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTCTCGGCAGTTGTTGCTGCCGAGAA                                             >  2:235011/5‑101                                           atATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAAT                                           >  2:937066/3‑101                                           atATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAAT                                           <  1:1309899/99‑1                                           atATTTTTTATGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAAT                                           >  1:1035134/3‑101                                                ttttatGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGT                                      <  2:1466988/95‑1                                                ttttatGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGT                                      <  2:1675337/95‑1                                                  ttatGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTT                                    <  1:940281/97‑1                                                  ttatGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTT                                    <  1:339659/97‑1                                                    atGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTT                                  >  1:550111/3‑101                                                    atGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTT                                  >  2:1469131/3‑101                                                     tGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTA                                 >  1:1119917/2‑101                                                       CCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAAT                               >  1:1060054/1‑101                                                       CCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAAT                               <  2:848283/101‑1                                                       CCGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAAT                               >  2:357730/1‑101                                                        CGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATT                              >  2:760487/1‑101                                                        CGGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATT                              <  2:1603908/101‑1                                                         GGATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTT                             <  2:886236/101‑1                                                          GATAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTT                            <  1:1384526/101‑1                                                            TAAGGCGTTTACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCG                          <  2:122227/101‑1                                                                      ACGCCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAG                <  1:1392721/101‑1                                                                         CCGCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAG             >  1:1548522/1‑101                                                                           GCATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTA           >  1:1260702/1‑101                                                                            CATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAA          <  1:292/101‑1                                                                            CATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAA          <  2:717292/101‑1                                                                             ATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAG         <  2:1035129/101‑1                                                                             ATCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAG         <  2:182017/101‑1                                                                              TCCGGCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGG        >  2:1704802/1‑101                                                                                  GCATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCAT    <  2:1002770/101‑1                                                                                    ATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCATCA  >  2:1356278/1‑101                                                                                    ATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCATCA  >  1:128532/1‑101                                                                                    ATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCATCA  >  1:667413/1‑101                                                                                    ATAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCATCA  >  2:417821/1‑101                                                                                                                                                                                          CTTATCAGGCCTACAAGATGATTGCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  10/84‑1 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAAACAAAGTGCACTTTGTCAATAATCTGATTTGTCGGCAGTTGTTGCTGCCGACAAATGCAGTTTTTAATTTTCGTGTGGAAAAGCAGTAAGGTCATCA  <  132/13049‑12950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.