New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 = 2175531 (0.470)33 (0.520)
+TCTCC
27/190 1.9 39.1% intergenic (–/–) –/– –/–
?10 = 61 77 (1.160)intergenic (–/–) –/– –/–

TGAGCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/21661‑21755
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑  <  10/61‑1
                                                                                               |||||                                                                     
TGAGCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCG                                                                      <  1:1214292/101‑1
   GCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAA                                                                   >  1:209782/1‑101
     TGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATA                                                                 <  2:101205/101‑1
         TATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATT                                                             >  2:958324/1‑101
                GCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTG                                                      <  1:826205/101‑1
                  ATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGag                                                    >  2:541638/1‑99
                             ATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGG                                        >  1:1191302/1‑101
                             ATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGG                                        >  2:1262535/1‑101
                             ATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGG                                        <  2:1711746/101‑1
                                GCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCG                                     >  1:34308/1‑101
                                 CGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGG                                    <  2:867350/101‑1
                                 CGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGG                                    >  2:1111231/1‑101
                                  GAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGA                                   >  1:74709/1‑101
                                    AGAAGACTGATGACAAACGGTAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATA                                 <  2:124384/101‑1
                                    AGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATA                                 >  1:1686919/1‑101
                                       AGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGG                              >  2:563616/1‑101
                                        GACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGC                             <  2:1577382/101‑1
                                         ACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCG                            >  2:1165894/1‑101
                                           TGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTT                          <  2:1051122/101‑1
                                             ATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCA                        <  2:546695/101‑1
                                              TGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCAC                       >  1:1430900/1‑101
                                              TGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCAC                       <  2:1639717/101‑1
                                              TGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGGTCAC                       >  2:1527126/1‑101
                                               GACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACG                      <  2:1428437/101‑1
                                                ACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGC                     <  2:627619/101‑1
                                                ACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGC                     >  2:887322/1‑101
                                                     CGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCAT                <  2:1191297/101‑1
                                                       GAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC              >  1:287722/1‑101
                                                         AAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG            >  1:716929/1‑101
                                                              GCCTGATGCGCTACGCTTATCAGGCCTGCATTTTCTCCGGAATATAGTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaa       <  1:518713/101‑4
                                                               CCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaa       <  1:1066552/101‑4
                                                                 TGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaaaca    <  2:627607/101‑7
                                                                   ATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCGGTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaaacaac  >  2:1582347/1‑93
                                                                                               |||||                                                                     
TGAGCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  1/21661‑21755
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑  <  10/61‑1

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.