New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | 1 | = 21755 | 31 (0.470) | 33 (0.520) +TCTCC |
27/190 | 1.9 | 39.1% | intergenic (–/–) | –/– | –/– |
? | 10 | = 61 | 77 (1.160) | intergenic (–/–) | –/– | –/– |
TGAGCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 1/21661‑21755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑ < 10/61‑1 ||||| TGAGCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCG < 1:1214292/101‑1 GCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAA > 1:209782/1‑101 TGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATA < 2:101205/101‑1 TATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATT > 2:958324/1‑101 GCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTG < 1:826205/101‑1 ATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGag > 2:541638/1‑99 ATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGG > 1:1191302/1‑101 ATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGG > 2:1262535/1‑101 ATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGG < 2:1711746/101‑1 GCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCG > 1:34308/1‑101 CGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGG < 2:867350/101‑1 CGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGG > 2:1111231/1‑101 GAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGA > 1:74709/1‑101 AGAAGACTGATGACAAACGGTAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATA < 2:124384/101‑1 AGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATA > 1:1686919/1‑101 AGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGG > 2:563616/1‑101 GACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGC < 2:1577382/101‑1 ACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCG > 2:1165894/1‑101 TGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTT < 2:1051122/101‑1 ATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCA < 2:546695/101‑1 TGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCAC > 1:1430900/1‑101 TGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCAC < 2:1639717/101‑1 TGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGGTCAC > 2:1527126/1‑101 GACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACG < 2:1428437/101‑1 ACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGC < 2:627619/101‑1 ACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGC > 2:887322/1‑101 CGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGCCGCAT < 2:1191297/101‑1 GAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCC > 1:287722/1‑101 AAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGG > 1:716929/1‑101 GCCTGATGCGCTACGCTTATCAGGCCTGCATTTTCTCCGGAATATAGTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaa < 1:518713/101‑4 CCTGATGCGCTTCGCTTATCAGGCCTACGTGTTTCCTGCAATATATTGAATTTGCACAGTTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaa < 1:1066552/101‑4 TGATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaaaca < 2:627607/101‑7 ATGCGCTACGCTTATCAGGCCTACATTTTCTCCGCAATATATTGAATTTGCGCG‑GTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAtaaacaac > 2:1582347/1‑93 ||||| TGAGCTGTTTATCGCGGCATCGTAACAGGATAGCGAAGAAGACTGATGACAAACGGAAAACAGCCTGATGCGCTACGCTTATCAGGCCTACATTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 1/21661‑21755 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCAATATATTGAATTTGCACGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCA‑‑‑‑‑‑‑‑ < 10/61‑1 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |