New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 1 1 =0 (0.000)26 (0.480)
+CCTACGGTTCGATGCGATT
19/162 0.5 52.1% intergenic (–/–) –/– –/–
?51 15466 = 59 (0.890)intergenic (–/–) –/– –/–

GAATACAATAACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  1/99‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGC  >  51/15466‑15513
                                                                                                   |||||||||||||||||||                                                
GAATACAATAACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCC                                                                   <  1:869736/101‑1
 AATACAATAACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCT                                                                  <  2:253176/101‑1
  ATACAATAACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTA                                                                 <  1:1217433/101‑1
     CAATAACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGG                                                              >  1:1166716/1‑101
          ACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGA                                                         >  2:318774/1‑101
              CGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCG                                                     <  2:344897/101‑1
                  GTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAAGGCTTTTTCGGGCCACCGGTTCAATGGGATTT                                                 >  2:1094214/1‑101
                  GTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTT                                                 <  1:1552098/101‑1
                  GTGGGTAGTAAAGCGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGCTCGATGCGATTT                                                 >  1:81499/1‑101
                      GTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAG                                             <  1:635390/101‑1
                      GTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAG                                             >  1:16399/1‑101
                       TAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGG                                            >  1:92568/1‑101
                           AAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGG                                        <  1:1128507/101‑1
                              GTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATA                                     <  1:1009397/101‑1
                               TGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAA                                    >  1:698540/1‑101
                                 GTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGA                                  <  2:1138316/101‑1
                                 GTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGA                                  <  1:221213/101‑1
                                     CAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCG                              >  2:331496/1‑101
                                       GAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATGAGATGCGCA                            <  1:211197/101‑1
                                       GAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCA                            <  2:1486000/101‑1
                                            GAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCAT                       <  2:71384/101‑1
                                                   TAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCC                >  2:397004/1‑101
                                                        GCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAa           >  1:341828/1‑100
                                                          AATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATA         <  1:138119/101‑1
                                                          AATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATA         >  2:1499820/1‑101
                                                           ATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAa        >  2:392253/1‑100
                                                           ATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAa        >  1:647971/1‑100
                                                            TTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAag       >  1:659894/1‑99
                                                             TAACTATTTGCCGGATGCTGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGAATCGCATCCaccaaaactg      >  2:1669106/1‑91
                                                               ACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAagtgc    <  1:1705970/101‑6
                                                               ACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAagtgc    >  2:935227/1‑96
                                                                 TATTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCGATGCGATTTGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAagtgccg  >  2:436231/1‑94
                                                                                                   |||||||||||||||||||                                                
GAATACAATAACCGCGGCGTGGGTAGTAAAGTGGTTGCAGAGGCGAAGAAGTAAGAGCAATTAACTATTTGCCGGATGCGGCGTAAACGCCTTATCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  1/99‑1
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACATTATTGCGGC  >  51/15466‑15513

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.