Predicted mutation
evidence seq id position mutation annotation gene description
RA 1 9,848 (T)8→7 intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*19,8410T.100.0% 367.9 / NA 77intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base . (33/44);  total (33/44)

TATTAATAAGCTCTCCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCTACTTACTTAT  >  1/9742‑9937
                                                                                                   |                                                                                                
tattaATAAGCTCTCCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCAtt                                                                                                 >  2:156219/1‑101 (MQ=255)
  ttaATAAGCTCTCCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCAtttt                                                                                               >  1:1242843/1‑101 (MQ=255)
       aaGCTCTCCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCAtttttttct                                                                                          <  1:182009/101‑3 (MQ=255)
           tctcCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTtgtt                                                                                     >  2:1063371/1‑101 (MQ=255)
           tctcCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTtgtt                                                                                     >  1:814103/1‑101 (MQ=255)
            ctcCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTtgtta                                                                                    >  1:1216987/1‑101 (MQ=255)
                  aaTTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTgttatgttat                                                                              <  2:35130/101‑1 (MQ=255)
                  aaTTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTgttatgttat                                                                              <  1:847597/101‑1 (MQ=255)
                  aaTTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTgttatgttat                                                                              >  1:322692/1‑101 (MQ=255)
                   aTTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTAtt                                                                             >  2:124772/1‑101 (MQ=255)
                    ttAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTGTTGTTATGTTATTg                                                                            <  1:1231473/101‑1 (MQ=255)
                    ttAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTg                                                                            <  1:811550/101‑1 (MQ=255)
                      aaCGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGt                                                                          <  1:963087/101‑1 (MQ=255)
                       aCGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTAGTCCATCCATTTTTTTCTTGTTATGTTATTGGTa                                                                         <  2:536620/101‑1 (MQ=255)
                       aCGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTa                                                                         <  1:83044/101‑1 (MQ=255)
                        cGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTAc                                                                        <  1:1457166/101‑1 (MQ=255)
                        cGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTAc                                                                        <  2:1242838/101‑1 (MQ=255)
                             aCTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTc                                                                   >  2:617548/1‑101 (MQ=255)
                             aCTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTc                                                                   >  1:950214/1‑101 (MQ=255)
                              ctctCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCa                                                                  <  1:1652626/101‑1 (MQ=255)
                                ctcATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCAtt                                                                >  2:1108032/1‑101 (MQ=255)
                                ctcATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCAtt                                                                >  2:889349/1‑101 (MQ=255)
                                 tcATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCAttt                                                               >  1:553724/1‑101 (MQ=255)
                                  cATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTg                                                              >  1:537876/1‑101 (MQ=255)
                                   aTGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGa                                                             >  2:740249/1‑101 (MQ=255)
                                    tGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAg                                                            <  1:773123/101‑1 (MQ=255)
                                     gTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAgg                                                           <  1:1636884/101‑1 (MQ=255)
                                          tgtgAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTtct                                                      <  2:405891/101‑1 (MQ=255)
                                           gtgAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTtctc                                                     >  2:771186/1‑101 (MQ=255)
                                            tgAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTAAGGCTTCTCa                                                    >  1:252386/1‑101 (MQ=255)
                                             gAAAAATAAACACATAAAAAGCAGCTATAAATCTTAATATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCAt                                                   >  1:134339/1‑101 (MQ=255)
                                             gAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCAt                                                   <  1:1314696/101‑1 (MQ=255)
                                              aaaaaTAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATg                                                  <  2:814098/101‑1 (MQ=255)
                                                aaaTAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGAt                                                <  1:525604/101‑1 (MQ=255)
                                                aaaTAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGAt                                                >  1:1246683/1‑101 (MQ=255)
                                                 aaTAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGAtt                                               >  2:901459/1‑101 (MQ=255)
                                                  aTAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTa                                              <  1:760104/101‑1 (MQ=255)
                                                     aaCACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTaaaa                                           <  1:97527/101‑1 (MQ=255)
                                                       cacaTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAgg                                         <  2:735506/101‑1 (MQ=255)
                                                       cacaTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAgg                                         <  2:1086228/101‑1 (MQ=255)
                                                        acaTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGt                                        >  2:908082/1‑101 (MQ=255)
                                                         caTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGtt                                       >  1:72515/1‑101 (MQ=255)
                                                         caTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGtt                                       <  2:282852/101‑1 (MQ=255)
                                                          aTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTc                                      >  1:637261/1‑101 (MQ=255)
                                                          aTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTc                                      >  1:490212/1‑101 (MQ=255)
                                                          aTAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTc                                      <  2:950209/101‑1 (MQ=255)
                                                               aaGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGttat                                 <  1:889354/101‑1 (MQ=255)
                                                               aaGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGttat                                 <  1:529775/101‑1 (MQ=255)
                                                               aaGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGttat                                 >  2:1322018/1‑101 (MQ=255)
                                                                agcagcTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGttatt                                <  2:1177889/101‑1 (MQ=255)
                                                                   agcTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTaaa                             <  1:1459785/101‑1 (MQ=255)
                                                                    gcTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTTTGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTaaaa                            >  2:667650/1‑101 (MQ=255)
                                                                     cTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAAc                           >  1:115278/1‑101 (MQ=255)
                                                                      tataAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAAcc                          <  1:1217457/101‑1 (MQ=255)
                                                                       ataAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCa                         <  1:1205565/101‑1 (MQ=255)
                                                                        taAATCTTAATATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCAt                        <  2:134339/101‑1 (MQ=255)
                                                                        taAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCAt                        >  1:570450/1‑101 (MQ=255)
                                                                        taAATCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCAt                        <  2:807768/101‑1 (MQ=255)
                                                                         aaaTCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCAtt                       >  2:1524441/1‑101 (MQ=255)
                                                                          aaTCTTATGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATta                      >  2:1033869/1‑101 (MQ=255)
                                                                          aaTCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATta                      <  1:1255277/101‑1 (MQ=255)
                                                                          aaTCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATta                      <  1:156219/101‑1 (MQ=255)
                                                                          aaTCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATta                      <  2:1290664/101‑1 (MQ=255)
                                                                          aaTCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATta                      <  2:269232/101‑1 (MQ=255)
                                                                           aTCTTAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATtaa                     <  1:1203164/101‑1 (MQ=255)
                                                                              ttAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATtaataa                  <  1:645265/101‑1 (MQ=255)
                                                                              ttAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATtaataa                  >  1:86317/1‑101 (MQ=255)
                                                                               tAAGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTaataat                 <  1:1336948/101‑1 (MQ=255)
                                                                                aaGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAataata                <  1:326675/101‑1 (MQ=255)
                                                                                 aGATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGCACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATAc               >  2:1423190/1‑101 (MQ=255)
                                                                                  gATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATAct              <  2:537871/101‑1 (MQ=255)
                                                                                  gATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATAct              >  1:64704/1‑101 (MQ=255)
                                                                                  gATTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATAct              <  1:1376716/101‑1 (MQ=255)
                                                                                   aTTGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATActc             >  2:1293195/1‑101 (MQ=255)
                                                                                     tGTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCta           <  2:72515/101‑1 (MQ=255)
                                                                                      gTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCtac          <  1:1090935/101‑1 (MQ=255)
                                                                                      gTTACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCtac          <  2:1664151/101‑1 (MQ=255)
                                                                                        tACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAATACCATTAATAATACTCtactt        >  1:932157/1‑101 (MQ=255)
                                                                                        tACTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTAAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCtactt        <  2:252386/101‑1 (MQ=255)
                                                                                         aCTCCATCCATTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCtactta       >  2:867186/1‑101 (MQ=255)
                                                                                             catccatTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCTActtactta   <  1:28646/101‑1 (MQ=255)
                                                                                              atccatTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCTACTTACTTAt  >  1:866203/1‑101 (MQ=255)
                                                                                              atccatTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCTACTTACTTAt  >  2:607876/1‑101 (MQ=255)
                                                                                              atccatTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATAAAAAGGTTCGTTATTAAAACCATTAATAATACTCTACTTACTTAt  <  2:156218/101‑1 (MQ=255)
                                                                                                   |                                                                                                
TATTAATAAGCTCTCCAAAATTAACGGGGACTCTCATGTTAATGTGAAAAATAAACACATAAAAAGCAGCTATAAATCTTAAGATTGTTACTCCATCCATTTTTTTTCTTGTTATGTTATTGGTACTAGTCATTTGAGGCTTCTCATGATTAAAAGGTTCGTTATTAAAACCATTAATAATACTCTACTTACTTAT  >  1/9742‑9937

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: