breseq version 0.35.7 revision b7a44cd89118
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence (highest frequency 20 of 653 shown, sorted by frequency from high to low) | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | 133 | 12,758 | 0 | T | C | 78.9% | 648.3 / 166.5 | 322 | intergenic (–/–) | –/– | –/– |
* | 133 | 12,714 | 0 | T | C | 74.9% | 350.4 / 165.8 | 259 | intergenic (–/–) | –/– | –/– |
* | 91 | 8,413 | 0 | T | G | 74.0% | 385.4 / 156.1 | 223 | intergenic (–/–) | –/– | –/– |
* | 87 | 19,478 | 0 | C | T | 73.4% | 258.3 / 109.3 | 158 | intergenic (–/–) | –/– | –/– |
* | 133 | 2,128 | 0 | T | C | 71.5% | 211.9 / 95.7 | 138 | intergenic (–/–) | –/– | –/– |
* | 133 | 2,003 | 0 | A | G | 67.7% | 221.8 / 159.2 | 186 | intergenic (–/–) | –/– | –/– |
* | 59 | 14,384 | 0 | T | C | 67.0% | 111.3 / 72.5 | 91 | intergenic (–/–) | –/– | –/– |
* | 76 | 21,532 | 0 | T | C | 65.7% | 73.8 / 62.7 | 70 | intergenic (–/–) | –/– | –/– |
* | 124 | 13,836 | 0 | T | C | 65.2% | 47.8 / 39.3 | 46 | intergenic (–/–) | –/– | –/– |
* | 62 | 21,225 | 0 | C | T | 64.8% | 132.4 / 123.3 | 128 | intergenic (–/–) | –/– | –/– |
* | 129 | 8,962 | 0 | C | T | 63.8% | 62.3 / 65.2 | 69 | intergenic (–/–) | –/– | –/– |
* | 133 | 12,698 | 0 | C | G | 63.5% | 60.1 / 190.9 | 204 | intergenic (–/–) | –/– | –/– |
* | 77 | 4,199 | 0 | T | C | 63.2% | 38.2 / 90.1 | 95 | intergenic (–/–) | –/– | –/– |
* | 11 | 30,147 | 1 | . | T | 62.5% | 586.8 / inf | 259 | intergenic (–/–) | –/– | –/– |
* | 62 | 21,231 | 0 | T | G | 61.1% | 140.6 / 141.9 | 126 | intergenic (–/–) | –/– | –/– |
* | 78 | 1,407 | 0 | A | G | 60.7% | 131.9 / 176.3 | 163 | intergenic (–/–) | –/– | –/– |
* | 62 | 21,232 | 0 | C | A | 59.7% | 58.9 / 170.1 | 124 | intergenic (–/–) | –/– | –/– |
* | 41 | 700 | 0 | C | T | 58.5% | 65.6 / 144.7 | 123 | intergenic (–/–) | –/– | –/– |
* | 31 | 2,073 | 0 | C | T | 58.0% | 51.1 / 117.3 | 100 | intergenic (–/–) | –/– | –/– |
* | 31 | 2,079 | 0 | A | G | 57.9% | 50.0 / 109.5 | 95 | intergenic (–/–) | –/– | –/– |
Marginal new junction evidence (lowest skew 10 of 220 shown) | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | 2 | = 103027 | 0 (0.000) | 31 (0.600) | 16/174 | 3.0 | 51.7% | intergenic (–/–) | –/– | –/– |
? | 66 | 13336 = | 58 (1.140) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 115 | = 9626 | 77 (1.130) | 30 (0.440) | 21/200 | 3.1 | 43.8% | intergenic (–/–) | –/– | –/– |
? | 17 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 111 | = 9632 | 90 (1.260) | 32 (0.480) | 22/200 | 3.1 | 41.6% | intergenic (–/–) | –/– | –/– |
? | 176 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 104 | = 16231 | 0 (0.000) | 17 (0.360) | 7/180 | 3.1 | 100% | intergenic (–/–) | –/– | –/– |
? | 15 | = 49030 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 100 | = 12817 | 18 (0.300) | 15 (0.370) +33 bp |
12/134 | 3.1 | 71.3% | intergenic (–/–) | –/– | –/– |
? | 145 | = 10378 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 86 | = 15079 | 69 (1.030) | 31 (0.500) +G |
19/198 | 3.2 | 47.6% | intergenic (–/–) | –/– | –/– |
? | 90 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 4 | = 78067 | 0 (0.000) | 20 (0.250) | 16/194 | 3.2 | 29.8% | intergenic (–/–) | –/– | –/– |
? | 65 | 7293 = | 94 (0.930) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 29 | 1 = | 0 (0.000) | 32 (0.450) | 23/196 | 3.2 | 52.0% | intergenic (–/–) | –/– | –/– |
? | 58 | 16302 = | 59 (0.850) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 147 | 1 = | 0 (0.000) | 34 (0.530) | 19/184 | 3.2 | 56.2% | intergenic (–/–) | –/– | –/– |
? | 91 | = 8417 | 53 (0.940) | intergenic (–/–) | –/– | –/– | |||||
* | ? | 145 | = 10378 | 0 (0.000) | 15 (0.340) +33 bp |
12/134 | 3.2 | 45.3% | intergenic (–/–) | –/– | –/– |
? | 79 | = 10783 | 54 (0.790) | intergenic (–/–) | –/– | –/– |