Predicted mutation
evidence seq id position mutation annotation gene description
RA 178 349 2 bp→GG intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1783490AG100.0% 155.8 / NA 44intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (19/25);  total (19/25)
*1783500AG100.0% 148.4 / NA 42intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (19/23);  total (19/23)

GAGCATCAGACAGGTCTTCCTGGATGTTGCTGCCGGGTTATGTGAAGGGGATGAGCAGTCGCCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGAATGTGTGGATAACCTACAAAGGAAAGCTACCGGGAAGAATTACTGGTTCTCTGAAGACGCCACCGACGGCATTGC  >  178/255‑424
                                                                                              ||                                                                          
gAGCATCAGACAGGTCTTCCTGGATGTTGCTGTAGGGTTATGTGAAGGGTATGAGCAGTCACCGGAAAAGCGTCCCATAATTTTAGAGGGGCAGGgtgtgt                                                                       <  2:826393/101‑1 (MQ=255)
gAGCATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGgtgtgt                                                                       <  2:160671/101‑1 (MQ=255)
   cATCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGa                                                                    >  1:938806/1‑101 (MQ=255)
    aTCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGAt                                                                   <  1:1207472/101‑1 (MQ=255)
    aTCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGAt                                                                   <  1:1516891/101‑1 (MQ=255)
     tCAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATa                                                                  <  2:955377/101‑1 (MQ=255)
      cAGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATaa                                                                 <  1:448671/101‑1 (MQ=255)
       cagtaattCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAAc                                                                >  2:1457515/8‑101 (MQ=255)
       aGACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAAc                                                                >  2:640976/1‑101 (MQ=255)
        gACAGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAAcc                                                               <  1:1390743/101‑1 (MQ=255)
           aGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTAc                                                            >  2:306431/1‑101 (MQ=255)
           aGGTCTTCCTGGATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTAc                                                            <  1:293898/101‑1 (MQ=255)
                     ggATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGaaaac                                                  <  1:910309/101‑3 (MQ=255)
                     ggATGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGaaaac                                                  <  1:487999/101‑3 (MQ=255)
                        tGTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAANTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACtgc                                               >  1:1300103/1‑99 (MQ=255)
                         gTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGcc                                              >  1:660141/1‑101 (MQ=255)
                         gTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGcc                                              <  1:1621215/101‑1 (MQ=255)
                         gTTGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGcc                                              >  2:1490007/1‑101 (MQ=255)
                          ttGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCg                                             <  1:640981/101‑1 (MQ=255)
                          ttGCTGCAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCg                                             <  2:181968/101‑1 (MQ=255)
                            gctgcAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCggg                                           <  2:1654060/101‑1 (MQ=255)
                              tgcAGGGTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGgaa                                         <  1:196601/101‑1 (MQ=255)
                               tcaggggTATGTGGAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTTTGGATAACCTACAAAGGAAAACTGCCGGgaag                                        <  1:1681109/98‑1 (MQ=255)
                                  gggTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAAt                                     <  2:395416/101‑1 (MQ=255)
                                  gggTTATGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAAt                                     <  2:1208743/101‑1 (MQ=255)
                                       aTGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTg                                <  1:1457521/101‑1 (MQ=255)
                                       aTGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTg                                <  2:1672800/101‑1 (MQ=255)
                                       aTGTGAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTg                                <  1:1222814/101‑1 (MQ=255)
                                           gAAGGGGATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTtc                            >  1:1557527/1‑101 (MQ=255)
                                              ggggATGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTcact                         <  1:306431/101‑1 (MQ=255)
                                                  aTGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAg                     >  2:1590335/1‑101 (MQ=255)
                                                  aTGAGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAg                     >  2:1324405/1‑101 (MQ=255)
                                                     aGCAGTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGAct                  <  1:700969/101‑2 (MQ=255)
                                                         gTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTccgc              >  2:1185738/1‑99 (MQ=255)
                                                         gTCACCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTccgc              >  2:715514/1‑99 (MQ=255)
                                                           caccGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTccgccg            >  1:860539/3‑101 (MQ=255)
                                                              cGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaa         >  2:1304225/1‑99 (MQ=255)
                                                              cGGAAAAGCGCCCCATAATTTTAGAGGCGCAGGGGGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaa         >  1:1237384/1‑99 (MQ=255)
                                                               ggAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaat        >  1:1711709/1‑98 (MQ=255)
                                                                gAAAAGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaatg       <  2:463709/101‑5 (MQ=255)
                                                                  aaaGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaatggt     >  1:225787/1‑95 (MQ=255)
                                                                   aaGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaatggta    >  1:1651270/1‑94 (MQ=255)
                                                                    aGCGCCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaatggtaa   >  2:591317/1‑93 (MQ=255)
                                                                     gcgcCCCATAATTTTAGAGGCGCAGGGTGTGTGGATAACCTACAAAGGAAAACTGCCGGGAAGAATTACTGGTTCACTGAAGACTCCGCCGaaatggtaat  <  1:1641056/101‑10 (MQ=255)
                                                                                              ||                                                                          
GAGCATCAGACAGGTCTTCCTGGATGTTGCTGCCGGGTTATGTGAAGGGGATGAGCAGTCGCCGGAAAAGCGCCCCATAATTTTAGAGGCGCAGAATGTGTGGATAACCTACAAAGGAAAGCTACCGGGAAGAATTACTGGTTCTCTGAAGACGCCACCGACGGCATTGC  >  178/255‑424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: