Predicted mutation
evidence seq id position mutation annotation gene description
RA 157 7,713 A→G intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*1577,7130AG94.0% 208.6 / 0.8 67intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (3/1);  new base G (26/37);  total (29/38)
Fisher's exact test for biased strand distribution p-value = 3.08e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

GCTGTTACTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGAACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTCTGGCTGGGGAGCCACTA  >  157/7615‑7809
                                                                                                  |                                                                                                
gcTGTTACTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGAc                                                                                                >  2:1555960/1‑101 (MQ=255)
 cTGTTACTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACt                                                                                               <  2:310864/101‑1 (MQ=255)
  tGTTACTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACtg                                                                                              <  2:250294/101‑1 (MQ=255)
   gTTACTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGAACtgt                                                                                             >  1:168490/1‑101 (MQ=255)
      aCTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGGCTGTGGt                                                                                          >  2:1171783/1‑101 (MQ=255)
         ggCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGttct                                                                                       <  2:956182/101‑1 (MQ=255)
           cGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGttcttc                                                                                     <  1:1073516/101‑1 (MQ=255)
            gATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGCCGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTtcc                                                                                    <  1:1565938/101‑1 (MQ=255)
            gATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGGCTGTGGTTCTtcc                                                                                    >  2:1322761/1‑101 (MQ=255)
            gATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTtcc                                                                                    <  2:1242625/101‑1 (MQ=255)
             aTTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTtccg                                                                                   <  1:876924/101‑1 (MQ=255)
                 tCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTtccgtccg                                                                               <  2:334684/101‑1 (MQ=255)
                       cgcgGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGGCTGTGGTTCTTCCGTCCGACCGCt                                                                         >  2:222124/1‑101 (MQ=255)
                         cgGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTcc                                                                       >  1:1583024/1‑101 (MQ=255)
                            cTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGgc                                                                    <  1:861154/101‑1 (MQ=255)
                            cTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGGGATGGTGTGGCTGGCAGGCGGGCTGTGGTTATTCCGTCCGACCGCCCCggg                                                                    >  2:1109694/1‑100 (MQ=255)
                              ggAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGACAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGgcgc                                                                  >  2:1269914/1‑101 (MQ=255)
                               gAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGct                                                                 <  2:484554/101‑1 (MQ=255)
                                aaGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGGTCTTCCGTCCGACCGCTCCGGCGctc                                                                >  1:830262/1‑101 (MQ=255)
                                aaGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGGGGGCTGTGGTTTTTCCGTCCGACCGCTCCGGCGctc                                                                >  2:1453993/1‑101 (MQ=255)
                                    gTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTg                                                            >  2:368985/1‑101 (MQ=255)
                                      aCCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCg                                                          <  1:1003170/101‑1 (MQ=255)
                                        cGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGtt                                                        >  2:944684/1‑101 (MQ=255)
                                         gTTGGCCTATCTGCACGTTTATCGGCATGACGTTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGttt                                                       <  1:563458/101‑1 (MQ=255)
                                         gTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGttt                                                       <  1:1033978/101‑1 (MQ=255)
                                         gTTGGCCTATCTGCACGGTTATCGGCATGACGCTGGAGATGGTGTGGCTGGCAGGTGGACTGAGGGTCTTCCGTCCGGCCGCTCCGGGCCTCTCCTCGttt                                                       >  2:506863/1‑101 (MQ=255)
                                          ttGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttg                                                      >  1:1178279/1‑101 (MQ=255)
                                          ttGGCCTATCTGCACCTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttg                                                      <  2:605888/101‑1 (MQ=255)
                                            tctcTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttgtt                                                    <  2:807182/98‑1 (MQ=255)
                                            ggCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttgtt                                                    <  2:260572/101‑1 (MQ=255)
                                            ggCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttgtt                                                    <  1:1328071/101‑1 (MQ=255)
                                             gCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttgttg                                                   <  1:883344/101‑1 (MQ=255)
                                               cTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTTCGTCCGACCCCTCCGGGGCTCTCTGCGTTTGTTGgc                                                 >  1:1281080/1‑101 (MQ=255)
                                               cTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTttgttaga                                                 >  1:807187/1‑98 (MQ=255)
                                               cTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGgc                                                 >  2:1565569/1‑101 (MQ=255)
                                                 aTCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGgcgc                                               >  2:813543/1‑101 (MQ=255)
                                                   cTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCtt                                             <  1:1382750/101‑1 (MQ=255)
                                                   cTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCtt                                             <  2:1704803/101‑1 (MQ=255)
                                                    tGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGATTc                                            <  1:276327/101‑1 (MQ=255)
                                                      cACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGt                                          >  1:386067/1‑101 (MQ=255)
                                                       aCGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGtt                                         <  2:1318217/101‑1 (MQ=255)
                                                          tttATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCt                                      <  2:1178274/101‑1 (MQ=255)
                                                             aTCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGGTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGGTTGTTGGCGCTTCGCTGCTGtt                                   >  1:307676/1‑101 (MQ=255)
                                                              tCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGttt                                  <  1:835868/101‑1 (MQ=255)
                                                                tgCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTGCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTAt                                <  1:495157/100‑1 (MQ=255)
                                                                ggCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTAt                                <  1:895721/101‑1 (MQ=255)
                                                                ggCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTAt                                <  2:571345/101‑1 (MQ=255)
                                                                 gCATGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATc                               <  1:964573/101‑1 (MQ=255)
                                                                  cATGACGCTGGTGATGGTGTGGCTGGCAGGTGAACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCa                              >  1:965689/1‑101 (MQ=255)
                                                                   aTGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAg                             >  1:978869/1‑101 (MQ=255)
                                                                   aTGACGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAg                             >  2:23245/1‑101 (MQ=255)
                                                                      aCGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTaa                          >  1:866527/1‑101 (MQ=255)
                                                                       cGCTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAAc                         <  1:1303594/101‑1 (MQ=255)
                                                                        gCTGGTGATGGTGTGGCTGGCAGGTGAACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACt                        <  2:168490/101‑1 (MQ=255)
                                                                         ccggTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTACGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACtt                       <  2:619609/99‑1 (MQ=255)
                                                                         cTGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACtt                       >  2:329874/1‑101 (MQ=255)
                                                                          tGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACttt                      >  2:1436162/1‑101 (MQ=255)
                                                                          tGGTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACttt                      <  2:576199/101‑1 (MQ=255)
                                                                           ggTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTg                     >  2:568173/1‑101 (MQ=255)
                                                                           ggTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTg                     <  2:950177/101‑1 (MQ=255)
                                                                            gTGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGt                    <  2:649770/101‑1 (MQ=255)
                                                                             tGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTc                   >  1:1191662/1‑101 (MQ=255)
                                                                             tGATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTc                   <  2:980755/101‑1 (MQ=255)
                                                                              gctGGTGTGGCTGGCAGGGGAACTGTGGTTCTTGCGTCCGCCCGATCCGGCGCTCCCTACGTTTGTTGGGGATTAGTTGATGTTTATCAGTAAATTTGtat                  >  1:1556323/3‑99 (MQ=255)
                                                                              gATGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTct                  <  1:132862/101‑1 (MQ=255)
                                                                               aTGGTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTctg                 <  1:464370/101‑1 (MQ=255)
                                                                               aTGGTGTGGCTGGCAGGTGGACTGTGGTTCTTACGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTctg                 >  2:1189622/1‑101 (MQ=255)
                                                                                 ggTGTGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTctggc               >  2:327727/1‑101 (MQ=255)
                                                                                  gtgtGGCTGGCAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTctggct              >  1:857965/1‑101 (MQ=255)
                                                                                     tggctggcAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTCTGGCTggg           >  1:769993/1‑101 (MQ=255)
                                                                                      ggctggcAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTCTGGCTgggg          <  1:1555966/101‑1 (MQ=255)
                                                                                         tgggAGGTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTCTGGCTGGGGAGc       <  2:1587694/101‑1 (MQ=255)
                                                                                              ggTGGACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTCTGGCTGGGGAGCCACTa  >  1:987779/1‑101 (MQ=255)
                                                                                                  |                                                                                                
GCTGTTACTGGCGATTATCTGGACGCGGCTGGAAGAGTACCGTTGGCCTATCTGCACGTTTATCGGCATGACGCTGGTGATGGTGTGGCTGGCAGGTGAACTGTGGTTCTTCCGTCCGACCGCTCCGGCGCTCTCTGCGTTTGTTGGCGCTTCGTTGCTGTTTATCAGTAACTTTGTCTGGCTGGGGAGCCACTA  >  157/7615‑7809

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: