Predicted mutation
evidence seq id position mutation annotation gene description
RA 32 26,926 T→C intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*3226,9260TC100.0% 205.5 / NA 57intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (30/27);  total (30/27)

TGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTT  >  32/26828‑27023
                                                                                                  |                                                                                                 
tgatgaACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa                                                                                                 <  1:858571/101‑1 (MQ=255)
tgatgaACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCa                                                                                                 >  1:564924/1‑101 (MQ=255)
 gatgaACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCAt                                                                                                <  2:991580/101‑1 (MQ=255)
 gatgaACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCAt                                                                                                <  1:54611/101‑1 (MQ=255)
  atgaACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATg                                                                                               >  1:1711083/1‑101 (MQ=255)
          cgcATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGct                                                                                       >  2:1497258/1‑101 (MQ=255)
            cATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGctct                                                                                     <  1:32697/101‑1 (MQ=255)
            cATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGctct                                                                                     <  2:1214107/101‑1 (MQ=255)
             aTTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCtt                                                                                    <  1:1312465/101‑1 (MQ=255)
                 gCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGtt                                                                                <  1:948129/101‑1 (MQ=255)
                   cAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGa                                                                              >  2:1441685/1‑101 (MQ=255)
                      cTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCt                                                                           >  1:50989/1‑101 (MQ=255)
                         aGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCa                                                                        <  2:1669575/101‑1 (MQ=255)
                          gCCAGACGACGGGCGATTTCAGTTTTACCGACTCCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCTCTCCATGGCGCAGCTCTTCGTTGAGCTGCAt                                                                       <  2:496649/101‑1 (MQ=255)
                            cAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTTCATGc                                                                     <  2:212301/101‑1 (MQ=255)
                            cAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc                                                                     >  1:662467/1‑101 (MQ=255)
                            cAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGc                                                                     >  2:176568/1‑101 (MQ=255)
                             aGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCg                                                                    >  2:284311/1‑101 (MQ=255)
                                    gggCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAg                                                             >  2:1712056/1‑101 (MQ=255)
                                        gATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGt                                                         >  2:590945/1‑101 (MQ=255)
                                         aTTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGtt                                                        >  2:984916/1‑101 (MQ=255)
                                         aTTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGtt                                                        <  1:910847/101‑1 (MQ=255)
                                         aTTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGtt                                                        <  2:564919/101‑1 (MQ=255)
                                          tttCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGGTa                                                       >  1:1670544/1‑101 (MQ=255)
                                           ttCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTAc                                                      <  1:675578/101‑1 (MQ=255)
                                            tCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACg                                                     <  1:100322/101‑1 (MQ=255)
                                                 tttACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCagag                                                >  2:198329/1‑101 (MQ=255)
                                                   tACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCa                                              >  1:255732/1‑101 (MQ=255)
                                                   tACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCa                                              <  2:730921/101‑1 (MQ=255)
                                                      cGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCCCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATc                                           <  1:901636/101‑1 (MQ=255)
                                                      cGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATc                                           <  2:1532031/101‑1 (MQ=255)
                                                           gcGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCcac                                      <  2:883338/100‑1 (MQ=255)
                                                               tCGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGaa                                  >  2:1054257/1‑101 (MQ=255)
                                                                cGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAAc                                 <  1:436425/101‑1 (MQ=255)
                                                                cGGGCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAAc                                 <  1:461065/101‑1 (MQ=255)
                                                                 gggCCGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACg                                >  1:535593/1‑101 (MQ=255)
                                                                     cGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTg                            >  1:81811/1‑101 (MQ=255)
                                                                     cGATCATCAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTg                            >  1:1410574/1‑101 (MQ=255)
                                                                       atcatcAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGc                          >  1:384732/1‑101 (MQ=255)
                                                                       atcatcAGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGc                          >  2:1551582/1‑101 (MQ=255)
                                                                          atcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGtt                       >  2:554811/1‑101 (MQ=255)
                                                                          atcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGtt                       >  2:1619371/1‑101 (MQ=255)
                                                                           tcaGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTg                      >  2:734144/1‑101 (MQ=255)
                                                                            caGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGt                     <  2:973660/101‑1 (MQ=255)
                                                                            caGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGt                     >  1:1028334/1‑101 (MQ=255)
                                                                             aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTc                    >  2:435310/1‑101 (MQ=255)
                                                                             aGGATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTc                    <  2:1692823/101‑1 (MQ=255)
                                                                              ggATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTcc                   >  1:110013/1‑101 (MQ=255)
                                                                               gATATTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCt                  <  1:1231022/101‑1 (MQ=255)
                                                                                  atTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGc               <  1:1278352/101‑1 (MQ=255)
                                                                                  atTTTTCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGc               >  1:1248147/1‑101 (MQ=255)
                                                                                   tttttCGGGGTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGcc              <  2:389631/101‑1 (MQ=255)
                                                                                          gggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGatgatg       <  2:513024/101‑1 (MQ=255)
                                                                                           ggTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGAtgt      <  2:1177631/101‑1 (MQ=255)
                                                                                            gTCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGAtgtg     >  1:728955/1‑101 (MQ=255)
                                                                                             tCACTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGAGTTGTCCTGGCCGATGATGTGc    >  1:284368/1‑101 (MQ=255)
                                                                                               aCTCCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCtt  >  2:1041502/1‑101 (MQ=255)
                                                                                                  |                                                                                                 
TGATGAACGGCGCATTCGCCAGCTTAGCCAGACGACGGGCGATTTCAGTTTTACCGACACCGGTCGGGCCGATCATCAGGATATTTTTCGGGGTCACTTCATGGCGCAGCTCTTCGTTGAGCTGCATGCGACGCCAGCGGTTACGCAGAGCAATCGCCACAGAACGCTTGGCGTTGTCCTGGCCGATGATGTGCTT  >  32/26828‑27023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: