Predicted mutation
evidence seq id position mutation annotation gene description
RA 28 21,324 A→G intergenic (–/–)  /  –/–

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*2821,3240AG100.0% 167.6 / NA 48intergenic (–/–)–/––/–
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (23/25);  total (23/25)

ACGGTAGGGCAAAACGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCATGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAATATTCTGGC  >  28/21228‑21421
                                                                                                |                                                                                                 
aCGGTAGGGCAAAACGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGAc                                                                                               <  2:1431147/101‑1 (MQ=255)
    tAGGGCAAAACGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTcac                                                                                           <  1:975033/101‑1 (MQ=255)
         cAAAACGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCAt                                                                                      <  2:1434903/101‑1 (MQ=255)
          aaaaCGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATg                                                                                     >  1:318676/1‑101 (MQ=255)
          aaaaCGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATg                                                                                     >  2:375901/1‑101 (MQ=255)
           aaaCGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGc                                                                                    <  2:1566503/101‑1 (MQ=255)
            aaCGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCa                                                                                   <  1:1586617/101‑1 (MQ=255)
            aaCGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCa                                                                                   <  2:133977/101‑1 (MQ=255)
             aCGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGGCAGTACCGTGACTCACACCATGCAg                                                                                  >  1:985235/1‑101 (MQ=255)
                ccGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGgag                                                                               >  2:981480/1‑101 (MQ=255)
                 cGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGgaga                                                                              >  2:1318245/1‑101 (MQ=255)
                  gATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGgagag                                                                             >  2:727722/1‑100 (MQ=255)
                  gATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGAt                                                                             <  1:1463724/101‑1 (MQ=255)
                  gATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGAt                                                                             <  1:1550127/101‑1 (MQ=255)
                   aTAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATc                                                                            <  1:957888/101‑1 (MQ=255)
                   aTAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATc                                                                            <  1:421256/101‑1 (MQ=255)
                    tAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCg                                                                           >  1:498697/1‑101 (MQ=255)
                                      ggAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCaaaaaa                                                         >  1:1485937/1‑101 (MQ=255)
                                       gAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAAt                                                        <  2:341644/101‑1 (MQ=255)
                                          cTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTgg                                                     >  1:1684218/1‑101 (MQ=255)
                                            ggCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCg                                                   >  1:1452186/1‑101 (MQ=255)
                                               aaaaaaTGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACa                                                >  1:224922/1‑101 (MQ=255)
                                                 aaaaTGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACAtt                                              <  1:981485/101‑1 (MQ=255)
                                                     tGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCa                                          <  2:452761/101‑1 (MQ=255)
                                                       ccGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGc                                        >  2:468309/1‑101 (MQ=255)
                                                       ccGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGc                                        >  1:1577632/1‑101 (MQ=255)
                                                       ccGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGc                                        <  1:1349185/101‑1 (MQ=255)
                                                       ccGCGACAACGGCGCAGGCGGGCGGTGTTCAGGGCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCCAAAAATTGGCGACATTATCAGc                                        >  2:1281090/1‑101 (MQ=255)
                                                         gcgACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGt                                      <  1:468314/101‑1 (MQ=255)
                                                           gACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTa                                    <  1:1387550/101‑1 (MQ=255)
                                                               aCGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGa                                <  1:416767/101‑1 (MQ=255)
                                                                  gcgcAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACgg                             >  1:1566359/1‑101 (MQ=255)
                                                                     cAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAAt                          <  2:985230/101‑1 (MQ=255)
                                                                     cAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAAt                          <  1:1606561/101‑1 (MQ=255)
                                                                     cAGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAAt                          <  1:804721/101‑1 (MQ=255)
                                                                      aGGCGGGCGGTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAAtt                         <  2:396727/101‑1 (MQ=255)
                                                                              ggTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCa                 >  1:45456/1‑101 (MQ=255)
                                                                              ggTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCa                 >  2:1587759/1‑101 (MQ=255)
                                                                              ggTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCa                 <  1:893798/101‑1 (MQ=255)
                                                                              ggTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCa                 >  1:192277/1‑101 (MQ=255)
                                                                              ggTGTTCAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCa                 >  1:1547155/1‑101 (MQ=255)
                                                                                    cAGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAat          >  2:1496676/1‑101 (MQ=255)
                                                                                     aGGTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAat          <  1:415736/101‑1 (MQ=255)
                                                                                      ggTCAGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAata         <  2:192277/101‑1 (MQ=255)
                                                                                       gTCAGTACCGTGACTCACCCCATGCAGGAGATCGCCGCCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAatat        <  2:950247/101‑1 (MQ=255)
                                                                                          aGTACCGTGACTCACCCCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGCTATCGACGGAATTTCTTTCCAGACCAATATTCt     <  2:513614/101‑1 (MQ=37)
                                                                                          aGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAATATTCt     >  1:541723/1‑101 (MQ=255)
                                                                                          aGTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAATATTCt     >  2:79391/1‑101 (MQ=255)
                                                                                           gTACCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAATATTCTg    >  1:1017759/1‑101 (MQ=255)
                                                                                             aCCGTGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAATATTCTGGc  <  2:1310067/101‑1 (MQ=255)
                                                                                                |                                                                                                 
ACGGTAGGGCAAAACGCCGATAACGCACGACAGGCGTCGGAACTGGCAAAAAATGCCGCGACAACGGCGCAGGCGGGCGGTGTTCAGGTCAGTACCATGACTCACACCATGCAGGAGATCGCCACCAGCTCGCAAAAAATTGGCGACATTATCAGCGTTATCGACGGAATTGCTTTCCAGACCAATATTCTGGC  >  28/21228‑21421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: