New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 85 = 1656347 (0.710)55 (0.980) 40/168 0.4 73.6% intergenic (–/–) –/– –/–
?95 = 17216 0 (0.000)intergenic (–/–) –/– –/–

AAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGGAATAGCTCAGT  >  95/17116‑17232
                                                                                                    |                                                                                        
aaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAc                                                                                          <  1:1022790/101‑1 (MQ=255)
aaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAc                                                                                          <  1:1349707/101‑1 (MQ=255)
aaaCTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAc                                                                                          <  2:656148/101‑1 (MQ=255)
    ttttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgg                                                                                      <  2:1627289‑M2/101‑5 (MQ=255)
    ttttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgg                                                                                      <  1:380546‑M2/101‑5 (MQ=255)
    ttttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgg                                                                                      <  2:1465130‑M2/101‑5 (MQ=255)
     tttttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcggg                                                                                     >  2:1593943‑M2/1‑96 (MQ=255)
        ttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaat                                                                                  >  1:1679034‑M2/1‑93 (MQ=255)
        ttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaat                                                                                  >  2:876792‑M2/1‑93 (MQ=255)
        ttGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaat                                                                                  >  1:905989‑M2/1‑93 (MQ=255)
         tGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaata                                                                                 >  2:8986‑M2/1‑92 (MQ=255)
         tGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaata                                                                                 <  1:934609‑M2/101‑10 (MQ=255)
          ggggggTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatag                                                                                >  1:113848‑M2/1‑91 (MQ=255)
            ggggTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagct                                                                              <  2:849588‑M2/101‑13 (MQ=255)
              ggTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctca                                                                            >  2:291801‑M2/1‑87 (MQ=255)
              ggTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctca                                                                            <  2:341176‑M2/101‑15 (MQ=255)
               gTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcag                                                                           <  2:1149296‑M2/101‑16 (MQ=255)
                 tGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatatctcagtt                                                                         >  1:1167206‑M2/1‑84 (MQ=255)
                 tGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagtt                                                                         >  1:1291508‑M2/1‑84 (MQ=255)
                   cAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttgg                                                                       >  2:916384‑M2/1‑82 (MQ=255)
                     gagGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggta                                                                     <  1:1292577‑M2/101‑22 (MQ=255)
                       gggAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtaga                                                                   <  2:168879‑M2/101‑24 (MQ=255)
                       gggAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtaga                                                                   <  1:604494‑M2/101‑24 (MQ=255)
                        ggAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagag                                                                  <  1:37322‑M2/101‑25 (MQ=255)
                         gAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagc                                                                 <  2:1346858‑M2/101‑26 (MQ=255)
                          aaaGATTTCTCGTATAATGCGCCTCCCGTAACGATGCAGAAATGTTAAACATACAAAAGCAAAATTAGGCAGTATgggggaatagctcagttggtagagca                                                                >  2:744921‑M2/1‑75 (MQ=255)
                            aGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacg                                                              <  1:1564977‑M2/101‑29 (MQ=255)
                                 tctcGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgacctt                                                         >  1:5191‑M2/1‑68 (MQ=255)
                                  ctcGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttgggagagcccgcccttg                                                        <  1:856888‑M2/101‑35 (MQ=255)
                                     gTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgcca                                                     <  1:879500‑M2/101‑38 (MQ=255)
                                        taATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaagg                                                  <  1:452985‑M2/101‑41 (MQ=255)
                                         aaTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggt                                                 >  1:197342‑M2/1‑60 (MQ=255)
                                         aaTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGGACgcgggaatagctcagttggtagagcacgaccttgccaaggt                                                 <  2:1695100‑M2/101‑42 (MQ=255)
                                          aTGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtc                                                <  2:990083‑M2/101‑43 (MQ=255)
                                             cgcCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggg                                             <  2:207060‑M2/101‑46 (MQ=255)
                                                cTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtc                                          <  2:1207469‑M2/101‑49 (MQ=255)
                                                 tCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcg                                         <  1:1493434‑M2/101‑50 (MQ=255)
                                                  cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgc                                        <  1:437127‑M2/101‑51 (MQ=255)
                                                  cccGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgc                                        <  2:1143226‑M2/101‑51 (MQ=255)
                                                     gTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgag                                     >  1:1207474‑M2/1‑48 (MQ=255)
                                                      tAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAAgcgggaatagctcagttggtagagcccgtcctccccaaggtcgcgctcgcgagt                                    >  2:1135912‑M2/1‑47 (MQ=255)
                                                       aaCGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagtt                                   <  1:609874‑M2/101‑56 (MQ=255)
                                                        acgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttc                                  <  2:1479932‑M2/101‑57 (MQ=255)
                                                         cgacgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcg                                 <  2:1197864‑M2/101‑58 (MQ=255)
                                                            cgCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagt                              >  2:128803‑M2/1‑41 (MQ=255)
                                                              cAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtct                            >  2:716882‑M2/1‑39 (MQ=255)
                                                               aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctc                           <  2:1561833‑M2/101‑64 (MQ=255)
                                                               aGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctc                           <  1:420211‑M2/101‑64 (MQ=255)
                                                                gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcg                          <  2:944956‑M2/101‑65 (MQ=255)
                                                                gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcg                          <  1:657343‑M2/101‑65 (MQ=255)
                                                                gAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcg                          >  1:956895‑M2/1‑37 (MQ=255)
                                                                 aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgt                         <  2:58673‑M2/101‑66 (MQ=255)
                                                                 aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgt                         <  1:1024037‑M2/101‑66 (MQ=255)
                                                                 aaaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgt                         <  2:611434‑M2/101‑66 (MQ=255)
                                                                  aaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtt                        >  2:316772‑M2/1‑35 (MQ=255)
                                                                  aaTGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtt                        <  2:662639‑M2/101‑67 (MQ=255)
                                                                    tGCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttc                      <  2:1282722‑M2/101‑69 (MQ=255)
                                                                     gCGAAAATTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcc                     >  1:1500649‑M2/1‑32 (MQ=255)
                                                                         aaaTTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgct                 >  1:1537897‑M2/1‑28 (MQ=255)
                                                                           aTTACGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctcc               <  1:108678‑M2/101‑76 (MQ=255)
                                                                               cGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaa           <  2:1420117‑M2/101‑80 (MQ=255)
                                                                               cGAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaa           <  2:1083716‑M2/101‑80 (MQ=255)
                                                                                gAAAGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaat          <  1:636945‑M2/101‑81 (MQ=255)
                                                                                  aaGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaattt        <  2:97213‑M2/101‑83 (MQ=255)
                                                                                   aGCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatttt       <  2:273674‑M2/101‑84 (MQ=255)
                                                                                    gCAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatttga      <  1:131864‑M2/101‑85 (MQ=255)
                                                                                     cAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatttgaa     >  1:1083721‑M2/1‑16 (MQ=255)
                                                                                     cAAAATTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatatgaa     <  2:367441‑M2/101‑86 (MQ=255)
                                                                                      aaaaTTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatttgaaa    <  1:805894‑M2/101‑87 (MQ=255)
                                                                                       aaaTTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatttgaaaa   <  2:351026‑M2/101‑88 (MQ=255)
                                                                                        aaTTAAGTAGTACgcgggaatatctcagttggtagagcacgaccttgccaaggtcgggttcgcgagttcgagtctcgtttcccgctccaaaatttgaaaag  >  2:856318‑M2/1‑13 (MQ=255)
                                                                                        aaTTAAGTAGTACgcgggaatagctcagttggtagagcacgaccttgccaaggtcggggtcgcgagttcgagtctcgtttcccgctccaaaatttgaaaag  <  2:631669‑M2/101‑89 (MQ=255)
                                                                                                    |                                                                                        
AAACTTTTTTGGGGGGTTGCAGAGGGAAAGATTTCTCGTATAATGCGCCTCCCGTAACGACGCAGAAATGCGAAAATTACGAAAGCAAAATTAAGTAGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCGGGAATAGCTCAGT  >  95/17116‑17232

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.