New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 38 21218 =53 (0.870)44 (0.890) 40/172 0.2 65.9% intergenic (–/–) –/– –/–
?39 = 32788 0 (0.000)intergenic (–/–) –/– –/–

TTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCTGATAAG  >  39/32689‑32802
                                                                                                   |                                                                                                   
ttAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAAAGCCTCATCCGCCCTGGACAAATGGGACGAACGg                                                                                                    <  2:1227385‑M2/101‑2 (MQ=255)
 tAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACAACTCATCCGCCCTGGACAAATGGTACGAGCGgt                                                                                                   <  1:997663‑M2/101‑3 (MQ=255)
  aaCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgta                                                                                                  <  2:377634‑M2/101‑4 (MQ=255)
   aCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGGGGCATAAACGCCTCATCCGCCCTGGACAAATGGAACGAGCGgtag                                                                                                 <  1:550243‑M2/101‑5 (MQ=255)
        gTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctg                                                                                            <  2:1001409‑M2/101‑10 (MQ=255)
        gTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctg                                                                                            <  1:402261‑M2/101‑10 (MQ=255)
          tATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgat                                                                                          >  1:315698‑M2/1‑90 (MQ=255)
           aTCCGTCCGCGTTTGAAGTTTCATTAATCGACGTACACTGTCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgata                                                                                         >  2:1550101‑M2/1‑89 (MQ=255)
           aTCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgata                                                                                         >  1:1670655‑M2/1‑89 (MQ=255)
              cgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataaga                                                                                      >  2:276749‑M2/1‑86 (MQ=255)
               gtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagac                                                                                     >  1:107310‑M2/1‑85 (MQ=255)
                 ccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgc                                                                                   >  1:408846‑M2/1‑83 (MQ=255)
                   gcgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgt                                                                                 >  2:1357794‑M2/1‑81 (MQ=255)
                   gcgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgt                                                                                 <  2:550688‑M2/101‑21 (MQ=255)
                    cgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgtt                                                                                <  1:700831‑M2/101‑22 (MQ=255)
                      tttGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaa                                                                              >  2:1424399‑M2/1‑78 (MQ=255)
                       ttGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaag                                                                             >  1:779580‑M2/1‑77 (MQ=255)
                        tGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagc                                                                            >  2:1561879‑M2/1‑76 (MQ=255)
                        tGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagc                                                                            <  2:1091642‑M2/101‑26 (MQ=255)
                          aaGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgt                                                                          <  2:728998‑M2/101‑28 (MQ=255)
                          aaGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgt                                                                          <  2:782864‑M2/101‑28 (MQ=255)
                           aGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtc                                                                         >  1:1718332‑M2/1‑73 (MQ=255)
                           aGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtc                                                                         >  2:1618505‑M2/1‑73 (MQ=255)
                               gCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcat                                                                     >  1:1568804‑M2/1‑69 (MQ=255)
                                   tAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcagg                                                                 <  1:898710‑M2/101‑37 (MQ=255)
                                    aaTCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggc                                                                <  1:1390308‑M2/101‑38 (MQ=255)
                                      tCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcat                                                              <  2:1220816‑M2/101‑40 (MQ=255)
                                      tCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcat                                                              >  1:449197‑M2/1‑62 (MQ=255)
                                       cGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcatt                                                             <  1:1384226‑M2/101‑41 (MQ=255)
                                           gTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattcctt                                                         <  1:1023035‑M2/101‑45 (MQ=255)
                                             acacTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttca                                                       >  1:29297‑M2/1‑55 (MQ=255)
                                              cacTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcag                                                      >  2:573242‑M2/1‑54 (MQ=255)
                                                 tGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagact                                                   <  1:1572017‑M2/101‑51 (MQ=255)
                                                     ggATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctc                                               >  2:526236‑M2/1‑47 (MQ=255)
                                                              aTAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcatt                                      <  1:1098144‑M2/101‑64 (MQ=255)
                                                              aTAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcatt                                      <  2:1204026‑M2/101‑64 (MQ=255)
                                                               tAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcatta                                     >  2:323282‑M2/1‑37 (MQ=255)
                                                               tAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcatta                                     <  1:1714200‑M2/101‑65 (MQ=255)
                                                                aaaCGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaa                                    >  1:640684‑M2/1‑36 (MQ=255)
                                                                  aCGCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagt                                  <  1:1319901‑M2/101‑68 (MQ=255)
                                                                  aCGCCTCATCCGCCCTGGACAAATGGTACGAGCGataggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagt                                  >  1:85198‑M2/1‑34 (MQ=255)
                                                                    gCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtat                                <  2:79922‑M2/101‑70 (MQ=255)
                                                                    gCCTCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtat                                >  1:1139923‑M2/1‑32 (MQ=255)
                                                                       tCATCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttc                             >  2:25229‑M2/1‑29 (MQ=255)
                                                                          tCCGCCCTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccag                          <  1:1566496‑M2/101‑76 (MQ=255)
                                                                               ccTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccatt                     >  2:1098139‑M2/1‑21 (MQ=255)
                                                                                cTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattc                    <  1:1274391‑M2/101‑82 (MQ=255)
                                                                                cTGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattc                    <  2:1702985‑M2/101‑82 (MQ=255)
                                                                                 tGGACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattcc                   <  1:58960‑M2/101‑83 (MQ=255)
                                                                                  ggACAAATGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattccc                  >  2:1296398‑M2/1‑18 (MQ=255)
                                                                                       aaTGGTACGAGCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattcccgcgct             >  1:1124012‑M2/1‑13 (MQ=255)
                                                                                                 gCGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattcccgcgcttttcatcttc   >  1:478147‑M2/1‑3 (MQ=255)
                                                                                                  cGgtaggcctgataagacgcgttaagcgtcgcatcaggcattccttcagactcctccgaatcattaagtatttccagccattcccgcgcttttcatcttct  <  1:194600‑M2/101‑100 (MQ=255)
                                                                                                   |                                                                                                   
TTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTGGACAAATGGTACGAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAGGCCTGATAAG  >  39/32689‑32802

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.