New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 36 13713 =76 (1.070)33 (0.500) 23/200 2.9 46.5% intergenic (–/–) –/– –/–
?91 = 18160 0 (0.000)intergenic (–/–) –/– –/–

CAGCGACGAAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  91/18060‑18160
                                                                                                    |                                                               
cAGCGACGAAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTgg                                                                 <  1:1110973/101‑1 (MQ=255)
cAGCGACGAAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTgg                                                                 <  1:418251/101‑1 (MQ=255)
   cgacgaAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaat                                                              >  1:1143886‑M2/1‑98 (MQ=255)
    gacgaAATCCCGGAAGCGGCAAAAGAGATCATGCGTGATATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatc                                                             >  2:1367054‑M2/1‑97 (MQ=255)
    gacgaAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatc                                                             >  2:199039‑M2/1‑97 (MQ=255)
     acgaAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcg                                                            <  2:6736‑M2/101‑6 (MQ=255)
        aaaTCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcct                                                         <  2:643884‑M2/101‑9 (MQ=255)
         aaTCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctg                                                        >  1:161822‑M2/1‑92 (MQ=255)
            cccGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAAGCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatg                                                     >  1:749584‑M2/1‑89 (MQ=255)
                  aGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctac                                               >  2:223347‑M2/1‑83 (MQ=255)
                  aGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctac                                               <  1:1586472‑M2/101‑19 (MQ=255)
                  aGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctac                                               >  2:838321‑M2/1‑83 (MQ=255)
                  aGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctac                                               >  1:129807‑M2/1‑83 (MQ=255)
                        aaaaGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttat                                         >  1:1399444‑M2/1‑77 (MQ=255)
                        aaaaGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttat                                         <  1:235672‑M2/101‑25 (MQ=255)
                         aaaGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatc                                        <  2:1311308‑M2/101‑26 (MQ=255)
                          aaGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatca                                       >  1:586303‑M2/1‑75 (MQ=255)
                           agagATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcag                                      >  1:834079‑M2/1‑74 (MQ=255)
                              gaTCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcc                                   >  2:929005‑M2/1‑71 (MQ=255)
                                  aTGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacg                               >  1:128236‑M2/1‑67 (MQ=255)
                                       tGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcata                          >  1:262504‑M2/1‑62 (MQ=255)
                                        gagaTGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatat                         >  1:31525‑M2/1‑61 (MQ=255)
                                             ggggATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaa                    <  2:16209‑M2/101‑46 (MQ=255)
                                                   tAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttatt              >  2:1334746‑M2/1‑50 (MQ=255)
                                                   tAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttatt              <  2:392081‑M2/101‑52 (MQ=255)
                                                     aCCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattga            >  1:1352702‑M2/1‑48 (MQ=255)
                                                     aCCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattga            <  1:748171‑M2/101‑54 (MQ=255)
                                                        cGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGGGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatt         <  2:1048718‑M2/101‑57 (MQ=255)
                                                         ggAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaattt        <  1:711220‑M2/101‑58 (MQ=255)
                                                           agaCGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatttgc      <  1:652993‑M2/101‑60 (MQ=255)
                                                            gaCGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatttgca     >  1:1242204‑M2/1‑41 (MQ=255)
                                                             aCGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatttgcac    >  2:963767‑M2/1‑40 (MQ=255)
                                                              cGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatttgcacg   >  2:813294‑M2/1‑39 (MQ=255)
                                                               ntgGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatttgcacga  <  1:445702‑M2/100‑64 (MQ=255)
                                                               gTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGGaatcgcctgatgcgctacgcttatcaggcctacgtcatattgcaatttattgaatttgcacga  <  1:1432548‑M2/101‑64 (MQ=255)
                                                                                                    |                                                               
CAGCGACGAAATCCCGGAAGCGGCAAAAGAGATCATGCGTGAGATGGGGATTAACCCGGAGACGTGGGAATACTAAAGCAAAAAAGAGCGGCGCGGAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  91/18060‑18160

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.