New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	31	1 =	0 (0.000)	64 (1.960) +CTTATTGATAGTGTTTTA	47/164	0.2	100%	intergenic (–/–)	–/–	–/–
	?	83	= 998	0 (0.000)					intergenic (–/–)	–/–	–/–

CTTCAACATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACGTGCGGAAGACATTGTGCTGGCGACGCTTATCCTGCTGCTGATCTCCCCGGTGCTGTGCTGCATTGCGCTGGCGGTGAAACTGAGCTCACCGGGGCCGGT  >  83/901‑1098                                                                                                  |                                                                                                     cTTCAACATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaa                                                                                                   <  2:852606‑M2/101‑4 (MQ=255) cTTCAACATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaa                                                                                                   <  1:562229‑M2/101‑4 (MQ=255)  ttCAACATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaa                                                                                                  <  1:991600‑M2/101‑5 (MQ=255)   tCAACATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaa                                                                                                 <  2:959194‑M2/101‑6 (MQ=255)    cAACGTTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaac                                                                                                >  1:446305‑M2/1‑95 (MQ=255)    cAACATTCTCCATTCACGCCTCGAAGAGATGAACGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaac                                                                                                <  2:431373‑M2/101‑7 (MQ=255)     aaCATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaaca                                                                                               <  2:1029910‑M2/101‑8 (MQ=255)      aCATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacac                                                                                              <  2:1470613‑M2/101‑9 (MQ=255)       cATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacact                                                                                             >  2:547299‑M2/1‑92 (MQ=255)       cATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacact                                                                                             <  2:777603‑M2/101‑10 (MQ=255)       cATTCTCCATTCACGCCTCGAAGAGATGAATGGCGCACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacact                                                                                             <  1:541729‑M2/101‑10 (MQ=255)        aTTCTCCATTCACGCCTCGAAGAGATGAATGGCGTGCCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacacta                                                                                            >  2:1075489‑M2/1‑91 (MQ=255)        aTTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacacta                                                                                            <  2:161146‑M2/101‑11 (MQ=255)        aTTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacacta                                                                                            >  1:228145‑M2/1‑91 (MQ=255)           ctcCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatca                                                                                         <  1:703793‑M2/101‑14 (MQ=255)           ctcCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatca                                                                                         >  1:587390‑M2/1‑88 (MQ=255)            tcCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCTCCTGCTCAAACtaaaacactatcaa                                                                                        >  2:504100‑M2/1‑87 (MQ=255)             ccATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaat                                                                                       <  1:474582‑M2/101‑16 (MQ=255)               aTTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataa                                                                                     <  1:1315408‑M2/101‑18 (MQ=255)               aTTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataa                                                                                     <  1:1245987‑M2/101‑18 (MQ=255)               aTTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataa                                                                                     <  2:147679‑M2/101‑18 (MQ=255)               aTTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataa                                                                                     >  2:1356955‑M2/1‑84 (MQ=255)               aTTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataa                                                                                     <  2:1487432‑M2/101‑18 (MQ=255)                  cACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagtt                                                                                  >  2:1136046‑M2/1‑81 (MQ=255)                   aCGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttg                                                                                 <  1:1254340‑M2/101‑22 (MQ=255)                     gCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttgga                                                                               >  2:512166‑M2/1‑78 (MQ=255)                       cTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGTTCAAACtaaaacactatcaataagttggagt                                                                             >  2:1658569‑M2/1‑76 (MQ=255)                       cTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagt                                                                             >  1:1717006‑M2/1‑76 (MQ=255)                       cTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGGTAACCGCCTGCTCAAACtaaaacactatcaataagttggagc                                                                             <  1:1598823‑M2/101‑26 (MQ=255)                         cGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtca                                                                           >  1:508194‑M2/1‑74 (MQ=255)                          gAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcat                                                                          <  1:1408803‑M2/101‑29 (MQ=255)                          gAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGCTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcat                                                                          <  1:98615‑M2/101‑29 (MQ=255)                           aaGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcatt                                                                         >  1:84170‑M2/1‑72 (MQ=255)                            agagATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcatta                                                                        >  2:1042114‑M2/1‑71 (MQ=255)                               gaTGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccg                                                                     >  2:1049011‑M2/1‑68 (MQ=255)                                  gAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggat                                                                  >  1:1350848‑M2/1‑65 (MQ=255)                                        cGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgt                                                            <  1:1549899‑M2/101‑43 (MQ=255)                                         gTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgtt                                                           <  1:1362025‑M2/101‑44 (MQ=255)                                         gTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgtt                                                           <  2:1134566‑M2/101‑44 (MQ=255)                                         gTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgtt                                                           <  2:953304‑M2/101‑44 (MQ=255)                                         gTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgtt                                                           >  2:87647‑M2/1‑58 (MQ=255)                                         gTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgtt                                                           <  2:902089‑M2/101‑44 (MQ=255)                                           aCCGGTGGTGCCGCTGTATGGCACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttag                                                         >  1:943218‑M2/1‑56 (MQ=255)                                           aCCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttag                                                         >  2:1388440‑M2/1‑56 (MQ=255)                                              ggtggtGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagact                                                      >  2:784032‑M2/1‑53 (MQ=255)                                                tggtgCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttc                                                    <  1:1191289‑M2/101‑51 (MQ=255)                                                  gtgCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttctt                                                  >  1:756440‑M2/1‑49 (MQ=255)                                                  gtgCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttctt                                                  >  2:1111518‑M2/1‑49 (MQ=255)                                                    gCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcc                                                >  2:331996‑M2/1‑47 (MQ=255)                                                    gCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcc                                                >  2:1573444‑M2/1‑47 (MQ=255)                                                      cGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttccca                                              >  1:327500‑M2/1‑45 (MQ=255)                                                        cTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccact                                            >  2:1705256‑M2/1‑43 (MQ=255)                                                        cTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccact                                            <  2:425437‑M2/101‑59 (MQ=255)                                                         tGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccacta                                           <  1:19177‑M2/101‑60 (MQ=255)                                                          gTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactag                                          <  2:1000293‑M2/101‑61 (MQ=255)                                                            aTGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagtt                                        >  1:379150‑M2/1‑39 (MQ=255)                                                            aTGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagtt                                        >  2:1245982‑M2/1‑39 (MQ=255)                                                              gACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagtttt                                      >  2:871948‑M2/1‑37 (MQ=255)                                                               acacGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttc                                     >  1:1189818‑M2/1‑36 (MQ=255)                                                                cacGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcg                                    <  1:997890‑M2/101‑67 (MQ=255)                                                                   gccgcTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtgg                                 <  2:814966‑M2/101‑70 (MQ=255)                                                                   gccgcTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtgg                                 >  2:285918‑M2/1‑32 (MQ=255)                                                                   gccgcTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtgg                                 >  1:902094‑M2/1‑32 (MQ=255)                                                                    ccgcTTTCCGGGGTTCATCGCCTGCTCAAACtaaaacactatcaataagcgggagtcattaccggatatttgttagacttcttcccactagttttcgtggc                                <  2:1078383‑M2/101‑71 (MQ=255)                                                                    ccgcTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggc                                <  2:1180472‑M2/101‑71 (MQ=255)                                                                      gcTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggcta                              <  1:1326990‑M2/101‑73 (MQ=255)                                                                       cTTTCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctat                             <  2:1182486‑M2/101‑74 (MQ=255)                                                                         ttGCGGAGTTACCTGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatat                           >  2:1334585‑M2/1‑26 (MQ=255)                                                                         ttCCGGGGTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatat                           >  2:991595‑M2/1‑26 (MQ=255)                                                                              gggTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatata                      >  1:852611‑M2/1‑21 (MQ=255)                                                                               ggTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataa                     >  1:959199‑M2/1‑20 (MQ=255)                                                                                gTTAACCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaa                    <  1:325727‑M2/101‑83 (MQ=255)                                                                                    aCCGCCTGCTCAAACtaaagcactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaag                >  1:147679‑M2/1‑15 (MQ=255)                                                                                    aCCGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaag                >  1:910410‑M2/1‑15 (MQ=255)                                                                                      cGCCTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagtt              >  2:570464‑M2/1‑13 (MQ=255)                                                                                        ccTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttat            <  1:1510856‑M2/101‑91 (MQ=255)                                                                                        ccTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttat            <  1:1445604‑M2/101‑91 (MQ=255)                                                                                        ccTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttat            <  2:793598‑M2/101‑91 (MQ=255)                                                                                        ccTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttat            <  2:1173601‑M2/101‑91 (MQ=255)                                                                                         cTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatc           >  2:799059‑M2/1‑10 (MQ=255)                                                                                         cTGCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatc           >  2:105695‑M2/1‑10 (MQ=255)                                                                                           gCTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatcag         <  1:715217‑M2/101‑94 (MQ=255)                                                                                            cTCAAACtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatcagg        <  1:224285‑M2/101‑95 (MQ=255)                                                                                                aaCtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatcaggagat    >  1:1029915‑M2/1‑3 (MQ=255)                                                                                                 aCtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatcaggagatt   <  1:914870‑M2/101‑100 (MQ=255)                                                                                                 aCtaaaacactatcaataagttggagtcattaccggatatttgttagacttcttcccactagttttcgtggctatatatataaaaaagttatcaggagatt   >  1:953309‑M2/1‑2 (MQ=255)                                                                                                  ctaaaacactatcaataagtcggagtcattaccggatatttgttagacttcttcccactacttttcgtggctatatatataaaaaagttatcaggagattt  <  2:409819‑M2/101‑101 (MQ=255)                                                                                                  |                                                                                                     CTTCAACATTCTCCATTCACGCCTCGAAGAGATGAATGGCGTACCGGTGGTGCCGCTGTATGACACGCCGCTTTCCGGGGTTAACCGCCTGCTCAAACGTGCGGAAGACATTGTGCTGGCGACGCTTATCCTGCTGCTGATCTCCCCGGTGCTGTGCTGCATTGCGCTGGCGGTGAAACTGAGCTCACCGGGGCCGGT  >  83/901‑1098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.