New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 223 = 6980 (0.000)42 (0.040) 35/200 1.5 100% intergenic (–/–) –/– –/–
?50 = 29744 0 (0.000)intergenic (–/–) –/– –/–

AAACTCTCCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  50/29644‑29744
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aaaCTCTCCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACt                                                                                    <  1:1058204/101‑1 (MQ=255)
aaaCTCTCCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACt                                                                                    <  1:85174/101‑1 (MQ=255)
aaaCTCTCCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACt                                                                                    >  2:547138/1‑101 (MQ=255)
 aaCTCTCCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTt                                                                                   <  1:62872‑M2/101‑2 (MQ=255)
  aCTCTCAAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTTATGCTTCCAACTta                                                                                  >  2:287955‑M2/1‑99 (MQ=255)
    tctcCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtact                                                                                >  2:1501934‑M2/1‑97 (MQ=255)
     ctcCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATTCTGCCAACTtactg                                                                               >  2:1622238‑M2/1‑96 (MQ=255)
         aGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgattt                                                                           >  1:936669‑M2/1‑92 (MQ=255)
         aGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgattt                                                                           <  2:1089779‑M2/101‑10 (MQ=255)
          gTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgattta                                                                          <  2:418085‑M2/101‑11 (MQ=255)
          gTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgattta                                                                          <  2:1116231‑M2/101‑11 (MQ=255)
            aTTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagt                                                                        >  2:481110‑M2/1‑89 (MQ=255)
               tAATTATTAAACTTAACACTAAAAAAAATCACATATTTAATAACAGAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCATTTtactgatttagtgta                                                                     >  2:1204787‑M2/1‑86 (MQ=255)
                aaTTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtat                                                                    >  1:1681181‑M2/1‑85 (MQ=255)
                  ttattCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatga                                                                  <  1:1422442‑M2/101‑19 (MQ=255)
                  ttattCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatga                                                                  >  2:171206‑M2/1‑83 (MQ=255)
                  ttattCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatga                                                                  <  2:1376493‑M2/101‑19 (MQ=255)
                    attCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatg                                                                >  2:1383444‑M2/1‑81 (MQ=255)
                      tCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggt                                                              >  2:187281‑M2/1‑79 (MQ=255)
                          cTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgttt                                                          <  2:1051157‑M2/101‑27 (MQ=255)
                            tAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgttttt                                                        <  2:1611169‑M2/101‑29 (MQ=255)
                                acTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgagg                                                    >  2:1701390‑M2/1‑69 (MQ=255)
                                 cTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATACGGTGATGCTGCCAACTtactgatttagtgtatgattgtgtttttgaggt                                                   >  2:828072‑M2/1‑68 (MQ=255)
                                       aaaaTCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctcca                                             <  2:652318‑M2/101‑40 (MQ=255)
                                        aaaTCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccag                                            >  2:729548‑M2/1‑61 (MQ=255)
                                         aaTCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGTTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagt                                           >  2:938682‑M2/1‑60 (MQ=255)
                                         aaTCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagt                                           >  2:1353796‑M2/1‑60 (MQ=255)
                                                tatTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct                                    >  2:1422436‑M2/1‑53 (MQ=255)
                                                 atTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg                                   <  2:642470‑M2/101‑50 (MQ=255)
                                                 atTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctg                                   >  1:20424‑M2/1‑52 (MQ=255)
                                                    tAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt                                <  1:891369‑M2/101‑53 (MQ=255)
                                                               tttttCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgt                     >  2:374935‑M2/1‑38 (MQ=255)
                                                                ttttCTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtc                    <  2:1300532‑M2/101‑65 (MQ=255)
                                                                    cTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                <  1:229104‑M2/101‑69 (MQ=255)
                                                                    cTTTGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                <  1:83508‑M2/101‑69 (MQ=255)
                                                                     tttGGTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcc               >  1:1116236‑M2/1‑32 (MQ=255)
                                                                         gTCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgtt           <  1:1048392‑M2/101‑74 (MQ=255)
                                                                          tCTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttc          <  2:904550‑M2/101‑75 (MQ=255)
                                                                           cTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca         >  1:1185937‑M2/1‑26 (MQ=255)
                                                                           cTACGTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca         >  2:1248567‑M2/1‑26 (MQ=255)
                                                                               gTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta     <  1:492346‑M2/101‑80 (MQ=255)
                                                                               gTATGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagcta     >  1:496621‑M2/1‑22 (MQ=255)
                                                                                  tGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg  >  1:1611175‑M2/1‑19 (MQ=255)
                                                                                  tGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg  >  1:1109117‑M2/1‑19 (MQ=255)
                                                                                  tGCGGTGATGCTGCCAACTtactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg  >  2:958021‑M2/1‑19 (MQ=255)
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AAACTCTCCAGTATTTAATTATTCAACTTAACACTAAAAAAAATCACATATTTAATATCATAATTTTTCTTTGGTCTACGTATGCGGTGATGCTGCCAACT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  50/29644‑29744

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.