New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 222 1 =0 (0.000)85 (0.050) 67/198 0.1 100% intergenic (–/–) –/– –/–
?50 = 2825 0 (0.000)intergenic (–/–) –/– –/–

AGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGCCAAATGAAACTTGCCATACGCCCGGTGGTCTTGTCGCGACGATAAGAGAAGAAAGTCTCATTTTCCGTATATGTACAA  >  50/2725‑2919
                                                                                                    |                                                                                              
aGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTc                                                                                                >  1:695328/1‑101 (MQ=255)
 gTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt                                                                                               >  1:1522857‑M2/1‑100 (MQ=255)
 gTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCt                                                                                               >  1:786076‑M2/1‑100 (MQ=255)
   tGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgt                                                                                             >  2:342195‑M2/1‑98 (MQ=255)
    gCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgta                                                                                            >  1:228278‑M2/1‑97 (MQ=255)
     cTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtac                                                                                           <  2:1637379‑M2/101‑6 (MQ=255)
     cTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtac                                                                                           <  1:12972‑M2/101‑6 (MQ=255)
     cTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtac                                                                                           >  2:113291‑M2/1‑96 (MQ=255)
       aCTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactg                                                                                         >  1:809058‑M2/1‑94 (MQ=255)
       aCTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactg                                                                                         <  1:1186784‑M2/101‑8 (MQ=255)
         tGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgca                                                                                       <  1:908522‑M2/101‑10 (MQ=255)
             gaTTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcaccca                                                                                   <  2:1062889‑M2/101‑14 (MQ=255)
             gaTTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcaccca                                                                                   <  1:854301‑M2/101‑14 (MQ=255)
              aTTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccat                                                                                  <  2:68100‑M2/101‑15 (MQ=255)
                tAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattt                                                                                <  1:282008‑M2/101‑17 (MQ=255)
                 aaaTGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccatttt                                                                               <  1:874486‑M2/101‑18 (MQ=255)
                     gAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttg                                                                           >  2:1167118‑M2/1‑80 (MQ=255)
                      aGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttgg                                                                          >  2:291740‑M2/1‑79 (MQ=255)
                        gTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggac                                                                        >  2:1605914‑M2/1‑77 (MQ=255)
                            tCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatg                                                                    <  1:1677878‑M2/101‑29 (MQ=255)
                              ccTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaa                                                                  >  1:1078966‑M2/1‑71 (MQ=255)
                              ccTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaa                                                                  >  1:653203‑M2/1‑71 (MQ=255)
                              ccTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaa                                                                  <  2:1455054‑M2/101‑31 (MQ=255)
                               cTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaa                                                                 >  2:687309‑M2/1‑70 (MQ=255)
                                  aaTTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgg                                                              <  2:835702‑M2/101‑35 (MQ=255)
                                  aaTTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgg                                                              <  2:760389‑M2/101‑35 (MQ=255)
                                  aaTTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgg                                                              <  2:629641‑M2/101‑35 (MQ=255)
                                   attattCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatgga                                                             <  2:350472‑M2/101‑36 (MQ=255)
                                    ttattCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgttctgcacccattttgttggacgatgaaatggaa                                                            >  2:1479636‑M2/1‑65 (MQ=255)
                                    ttattCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaa                                                            >  1:116665‑M2/1‑65 (MQ=255)
                                     tattCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaat                                                           >  1:959878‑M2/1‑64 (MQ=255)
                                      attCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaata                                                          <  1:66594‑M2/101‑39 (MQ=255)
                                      attCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaata                                                          >  2:12972‑M2/1‑63 (MQ=255)
                                      attCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaata                                                          >  1:350472‑M2/1‑63 (MQ=255)
                                       ttCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatag                                                         >  2:1644732‑M2/1‑62 (MQ=255)
                                            ggTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccct                                                    <  1:367738‑M2/101‑45 (MQ=255)
                                             gTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagccccta                                                   >  2:854296‑M2/1‑56 (MQ=255)
                                             gTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagccccta                                                   >  1:1460684‑M2/1‑56 (MQ=255)
                                             gTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagccccta                                                   >  1:811270‑M2/1‑56 (MQ=255)
                                               tATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaat                                                 >  2:116551‑M2/1‑54 (MQ=255)
                                               tATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaat                                                 >  1:959298‑M2/1‑54 (MQ=255)
                                                 ttGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat                                               >  2:908517‑M2/1‑52 (MQ=255)
                                                 ttGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatat                                               >  2:1113557‑M2/1‑52 (MQ=255)
                                                   gACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgt                                             <  2:853441‑M2/101‑52 (MQ=255)
                                                   gACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgt                                             <  2:1068182‑M2/101‑52 (MQ=255)
                                                    aCCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtc                                            >  1:865755‑M2/1‑49 (MQ=255)
                                                    aCCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtc                                            <  2:90429‑M2/101‑53 (MQ=255)
                                                     ccAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca                                           >  1:560513‑M2/1‑48 (MQ=255)
                                                     ccAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca                                           <  2:785565‑M2/101‑54 (MQ=255)
                                                     ccAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtca                                           >  2:149257‑M2/1‑48 (MQ=255)
                                                      cAGATTAATGTGAAAAGAAAATCACGCGTACCGGAACGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaa                                          <  2:285081‑M2/101‑55 (MQ=255)
                                                       aGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaa                                         >  2:1141811‑M2/1‑46 (MQ=255)
                                                            aaTGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgaactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaa                                    <  2:411259‑M2/101‑61 (MQ=255)
                                                             aTGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaa                                   <  1:1589412‑M2/101‑62 (MQ=255)
                                                             aTGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaa                                   >  2:265572‑M2/1‑40 (MQ=255)
                                                              tgtgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaa                                  >  2:1078549‑M2/1‑39 (MQ=255)
                                                               gtgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaat                                 <  1:808933‑M2/101‑64 (MQ=255)
                                                               gtgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaat                                 <  2:71994‑M2/101‑64 (MQ=255)
                                                               gtgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaat                                 >  1:285081‑M2/1‑38 (MQ=255)
                                                               gtgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaat                                 >  2:1012493‑M2/1‑38 (MQ=255)
                                                                tgAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaata                                <  2:1241760‑M2/101‑65 (MQ=255)
                                                                 gaaaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatac                               <  1:1583701‑M2/101‑66 (MQ=255)
                                                                 gaaaagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatac                               >  1:1478922‑M2/1‑36 (MQ=255)
                                                                    aagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccct                            <  2:1668962‑M2/101‑69 (MQ=255)
                                                                    aagaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccct                            >  2:1155845‑M2/1‑33 (MQ=255)
                                                                     agaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctt                           >  2:256888‑M2/1‑32 (MQ=255)
                                                                      gaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttt                          >  1:1637385‑M2/1‑31 (MQ=255)
                                                                      gaaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttt                          >  1:898343‑M2/1‑31 (MQ=255)
                                                                       aaaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaataccctttt                         >  2:1219552‑M2/1‑30 (MQ=255)
                                                                        aaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg                        >  2:333096‑M2/1‑29 (MQ=255)
                                                                        aaaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttg                        <  1:960126‑M2/101‑73 (MQ=255)
                                                                         aaTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaaaggaatagcccctaatatgtcaaagccaaaatacccttttga                       <  1:179214‑M2/101‑74 (MQ=255)
                                                                          aTCACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaa                      <  2:1228830‑M2/101‑75 (MQ=255)
                                                                            cACGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaa                    <  2:505064‑M2/101‑77 (MQ=255)
                                                                             aCGCGTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaag                   >  2:464083‑M2/1‑24 (MQ=255)
                                                                              cgcgTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcctctaatatgtcaaagccaaaatacccttttgaaaagc                  >  1:540442‑M2/1‑23 (MQ=255)
                                                                                 gTACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcc               <  1:1507344‑M2/101‑82 (MQ=255)
                                                                                  tACCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcct              >  2:282008‑M2/1‑19 (MQ=255)
                                                                                   aCCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcctt             <  1:795908‑M2/101‑84 (MQ=255)
                                                                                   aCCGGATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgcctt             <  1:1473180‑M2/101‑84 (MQ=255)
                                                                                      ggATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaa          <  1:974905‑M2/101‑87 (MQ=255)
                                                                                       gATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaag         <  1:814241‑M2/101‑88 (MQ=255)
                                                                                       gATCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaag         >  2:1443656‑M2/1‑14 (MQ=255)
                                                                                        aTCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagt        <  1:1307876‑M2/101‑89 (MQ=255)
                                                                                        aTCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagt        <  1:1616454‑M2/101‑89 (MQ=255)
                                                                                         tCGTCTTGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtc       >  1:1455060‑M2/1‑12 (MQ=255)
                                                                                              ttGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaa  >  2:1322803‑M2/1‑7 (MQ=255)
                                                                                              ttGATTCtgtactgcacccattttgttggacgatgaaatggaatagcccctaatatgtcaaagccaaaatacccttttgaaaagcgccttgaagtcgtgaa  <  1:1568921‑M2/101‑95 (MQ=255)
                                                                                                    |                                                                                              
AGTTGCTACTGGAGATTAAATGAGGTCATCCCTCAATTATTCAAGGTTATTGACCAGATTAATGTGAAAAGAAAATCACGCGTACCGGATCGTCTTGATTCTTTAGGTTATATCAGCCAAATGAAACTTGCCATACGCCCGGTGGTCTTGTCGCGACGATAAGAGAAGAAAGTCTCATTTTCCGTATATGTACAA  >  50/2725‑2919

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.