| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 188 | = 49 | 48 (0.960) | 48 (0.840) +CAGAC |
35/190 | 0.4 | 67.8% | intergenic (–/–) | –/– | –/– |
| ? | 41 | 1 = | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAAGAGAGCTTC > 41/1‑99 | catcaagtccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCg > 1:1501428‑M2/65‑101 (MQ=255) atcaagtccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCgg > 1:215647‑M2/64‑101 (MQ=255) atcaagtccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCgg > 1:294219‑M2/64‑101 (MQ=255) atcaagtccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCgg > 1:98218‑M2/64‑101 (MQ=255) atcaagtccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCgg > 2:1325869‑M2/64‑101 (MQ=255) aagtccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCa > 2:1639489‑M2/61‑101 (MQ=255) tccggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCAcgc < 1:326152‑M2/44‑1 (MQ=255) cggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGa > 1:1166954‑M2/56‑101 (MQ=255) ggtggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGAt < 1:1288754‑M2/47‑1 (MQ=255) tggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATgg < 2:612281‑M2/49‑1 (MQ=255) tggggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATgg > 1:195162‑M2/53‑101 (MQ=255) ggttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGt > 1:1684749‑M2/50‑101 (MQ=255) gttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTa > 2:360494‑M2/49‑101 (MQ=255) ttcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAg < 1:480155‑M2/54‑1 (MQ=255) tcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGc < 2:791037‑M2/55‑1 (MQ=255) tcccgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGc > 2:165614‑M2/47‑101 (MQ=255) cgagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCg > 1:635694‑M2/44‑101 (MQ=255) gagcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCga > 2:371419‑M2/43‑101 (MQ=255) agcggccaaagggagcagactgtaaatctgccgtcaccgacTTCGACGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCgag > 2:1274044‑M2/42‑101 (MQ=255) agcggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCgag < 2:294219‑M2/60‑1 (MQ=255) cggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGAc < 1:1641423‑M2/62‑1 (MQ=255) ggccaaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACg < 1:772402‑M2/63‑1 (MQ=255) caaagggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATa > 1:245003‑M2/36‑101 (MQ=255) agggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCCCCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGt < 1:1413252‑M2/69‑1 (MQ=255) agggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGt > 2:1460366‑M2/33‑101 (MQ=255) ggagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTc < 2:1166949‑M2/71‑1 (MQ=255) gagcagactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCg < 2:344061‑M2/72‑1 (MQ=255) cagtctgtaaatctgccgtcacaggcTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCCCGCGATGGCTTAGCCCGAGACGATAAGTTCGCtt < 2:441574‑M2/75‑1 (MQ=255) agactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTa > 2:212017‑M2/26‑101 (MQ=255) agactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTa > 1:1083878‑M2/26‑101 (MQ=255) gactgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTAc < 1:1366656‑M2/77‑1 (MQ=255) acgataaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGTCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTAcc < 2:930404‑M2/78‑1 (MQ=255) ctgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCg > 2:953501‑M2/23‑101 (MQ=255) ctgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCg > 1:1061047‑M2/23‑101 (MQ=255) ctgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTAGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCg > 2:272843‑M2/23‑101 (MQ=255) tgtaaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCgg > 1:364208‑M2/22‑101 (MQ=255) taaatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCt < 2:1601629‑M2/82‑1 (MQ=255) aatctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCg > 1:581377‑M2/18‑101 (MQ=255) ctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAAt < 1:601618‑M2/87‑1 (MQ=255) ctgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAAt < 1:1639495‑M2/87‑1 (MQ=255) tgccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATg > 1:920263‑M2/14‑101 (MQ=255) ccgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGaa < 2:1061042‑M2/90‑1 (MQ=255) cgtcacagacTTCGAAGGTTCGAATCCTTCCCCCCCCACCAATTTCGGCCACGCGGTGGCGTAGCCCGAGACGATAAGTTCGCTTGCCGGCTCGAATGAag < 2:1430594‑M2/91‑1 (MQ=255) cgtcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAag < 2:215647‑M2/91‑1 (MQ=255) cgtcacagacTTCGAAGGTTCAAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAag < 2:978474‑M2/91‑1 (MQ=255) tcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAagag < 1:542885‑M2/93‑1 (MQ=255) tcacagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAAAGAagag > 1:1537507‑M2/9‑101 (MQ=255) acagacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAagagag < 2:581372‑M2/95‑1 (MQ=255) gacTTCGAAGGTTCGAATCCTTCCCCCCCCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAAGAGAGCtt < 2:1283732‑M2/98‑1 (MQ=255) gacTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAAGAGAGCtt < 1:360494‑M2/98‑1 (MQ=255) acTTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAAGAGAGCTtc > 1:1021791‑M2/3‑101 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TTCGAAGGTTCGAATCCTTCCCCCACCACCAATTTCGGCCACGCGATGGCGTAGCCCGAGACGATAAGTTCGCTTACCGGCTCGAATGAAGAGAGCTTC > 41/1‑99 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |