| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 114 | 12107 = | 60 (0.800) | 28 (0.610) +GGAGCACGAATGTAGGCCGGATAAGGCGTTTA |
20/136 | 1.4 | 57.9% | intergenic (–/–) | –/– | –/– |
| ? | 129 | = 13398 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
CGCGCAATCCGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 129/13302‑13398 | cgcgCAATCCGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGGCTGCCGGATGCGGCGtaaa > 1:472719‑M2/1‑97 (MQ=255) gcgcAATCCGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaac > 2:455576‑M2/1‑96 (MQ=255) cgcAATCCGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacg < 2:1049169‑M2/101‑7 (MQ=255) aTCCGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgcctt > 1:1163454‑M2/1‑91 (MQ=255) ccGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttat > 1:1532590‑M2/1‑89 (MQ=255) gCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccg > 1:437699‑M2/1‑86 (MQ=255) aaCGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcc > 2:1273112‑M2/1‑83 (MQ=255) gCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctaca < 2:976927‑M2/101‑23 (MQ=255) cccGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacat > 2:104186‑M2/1‑78 (MQ=255) ccGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacatt < 2:1616447‑M2/101‑25 (MQ=255) aaTTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgt < 2:690910‑M2/101‑28 (MQ=255) gCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTCCCGGATGCGGCGtaaaagccttatccggcctccattcgtgctcccg > 2:1681644‑M2/1‑67 (MQ=255) tGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtag > 2:970022‑M2/1‑64 (MQ=255) tGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtag > 1:1333419‑M2/1‑64 (MQ=255) gggTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtagg > 1:913274‑M2/1‑63 (MQ=255) ggTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggc < 2:1706166‑M2/101‑40 (MQ=255) gTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcc < 1:680317‑M2/101‑41 (MQ=255) tAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcct < 2:1126662‑M2/101‑42 (MQ=255) tgatCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgata < 1:1304281‑M2/101‑46 (MQ=255) atCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataag < 1:1495479‑M2/101‑48 (MQ=255) tCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataaga < 1:1221733‑M2/101‑49 (MQ=255) ccATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagac > 2:688900‑M2/1‑52 (MQ=255) ccATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagac < 2:1102379‑M2/101‑50 (MQ=255) ccATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagac > 1:1328408‑M2/1‑52 (MQ=255) cATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacg < 1:777709‑M2/101‑51 (MQ=255) cATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacg < 1:879995‑M2/101‑51 (MQ=255) ttaGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtca > 1:492599‑M2/1‑46 (MQ=255) taGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcag > 2:1342351‑M2/1‑45 (MQ=255) cTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgt < 2:449582‑M2/101‑60 (MQ=255) ccTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcg > 2:1325512‑M2/1‑40 (MQ=255) cTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgc < 1:1190066‑M2/101‑63 (MQ=255) aaTTTATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcagg > 1:1506353‑M2/1‑33 (MQ=255) ttATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcag > 1:1713299‑M2/1‑30 (MQ=255) ttATGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcag < 2:54462‑M2/101‑72 (MQ=255) aTGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcagcg < 2:1076751‑M2/101‑74 (MQ=255) aTGTAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcagcg < 2:1399958‑M2/101‑74 (MQ=255) tAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcagcgcac > 2:680312‑M2/1‑25 (MQ=255) tAGCGCATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcagcgcac > 1:1059402‑M2/1‑25 (MQ=255) gcATGACTGCCGGATGCGGCGtaaacgccttatccggcctacattcgtgctcccgtaggcctgataagacgcgtcagcgtcgcatcaggcagcgcacggac < 1:1424975‑M2/101‑81 (MQ=255) | CGCGCAATCCGGCCAACGGCCCGAATTTCGGCATGGGTAGATGATCCATTATTAGCTCCTGAAAAATTTATGTAGCGCATGACTGCCGGATGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 129/13302‑13398 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |