New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 17 =65 (0.950)58 (0.850) 30/188 1.9 65.5% intergenic (–/–) –/– –/–
?206 = 4092 0 (0.000)intergenic (–/–) –/– –/–

AAGTGCAGCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGCC  >  206/3993‑4098
                                                                                                   |                                                                                      
aaGTGCAGCGTCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAa                                                                                       >  2:1021213‑M2/1‑100 (MQ=255)
 aGTGCAGCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaa                                                                                      >  2:1383365‑M2/1‑99 (MQ=255)
  gTGCAGCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaac                                                                                     >  1:702909‑M2/1‑98 (MQ=255)
     cAGCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgcc                                                                                  <  2:1544291‑M2/101‑7 (MQ=255)
       gCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgcctt                                                                                >  1:1029483‑M2/1‑93 (MQ=255)
       gCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgcctt                                                                                >  2:888752‑M2/1‑93 (MQ=255)
        cGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgcctta                                                                               >  2:1174238‑M2/1‑92 (MQ=255)
         ggCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttat                                                                              >  1:1061528‑M2/1‑91 (MQ=255)
           cATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatcc                                                                            >  1:1612224‑M2/1‑89 (MQ=255)
            aTCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccg                                                                           <  2:345623‑M2/101‑14 (MQ=255)
            aTCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAATGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccg                                                                           <  2:292707‑M2/101‑14 (MQ=255)
              cGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggc                                                                         >  2:1699292‑M2/1‑86 (MQ=255)
               ggCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcc                                                                        <  1:763391‑M2/101‑17 (MQ=255)
                gCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggact                                                                       >  1:1427495‑M2/1‑84 (MQ=255)
                     ggCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaa                                                                  >  2:420692‑M2/1‑79 (MQ=255)
                       cagcagCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaatt                                                                >  1:599800‑M2/1‑77 (MQ=255)
                       cagcagCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaatt                                                                >  1:16961‑M2/1‑77 (MQ=255)
                        agcagcCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattc                                                               <  1:219004‑M2/101‑26 (MQ=255)
                          cagcCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattctt                                                             >  2:1145388‑M2/1‑74 (MQ=255)
                           agcCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttc                                                            >  2:500401‑M2/1‑73 (MQ=255)
                           agcCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttc                                                            <  2:1566224‑M2/101‑29 (MQ=255)
                            gcCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttcc                                                           >  1:1405250‑M2/1‑72 (MQ=255)
                            gcCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttcc                                                           >  1:821315‑M2/1‑72 (MQ=255)
                             ccTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccn                                                          >  1:445473‑M2/1‑71 (MQ=255)
                             ccTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttcca                                                          <  1:1653623‑M2/101‑31 (MQ=255)
                              cTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaa                                                         >  2:697411‑M2/1‑70 (MQ=255)
                                  ttGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattc                                                     <  2:68352‑M2/101‑36 (MQ=255)
                                   tGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattca                                                    <  2:1624557‑M2/101‑37 (MQ=255)
                                   tGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattca                                                    <  2:1301034‑M2/101‑37 (MQ=255)
                                     aaaCGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatcctgcctacaaattcttccaaattcaat                                                  >  2:761075‑M2/1‑63 (MQ=255)
                                     aaaCGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaat                                                  >  1:46231‑M2/1‑63 (MQ=255)
                                     aaaCGTTTTCCGGCGCTTCTCAAGGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaat                                                  <  2:1295883‑M2/101‑39 (MQ=255)
                                      aaCGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaata                                                 <  1:1098136‑M2/101‑40 (MQ=255)
                                      aaCGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaata                                                 <  1:497051‑M2/101‑40 (MQ=255)
                                       aCGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatat                                                >  2:939540‑M2/1‑61 (MQ=255)
                                         gTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatat                                              >  1:866520‑M2/1‑59 (MQ=255)
                                         gTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatat                                              >  2:1165844‑M2/1‑59 (MQ=255)
                                          ttttCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatatt                                             >  1:207560‑M2/1‑58 (MQ=255)
                                           tttCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattg                                            >  1:1535898‑M2/1‑57 (MQ=255)
                                             tCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgca                                          >  1:615482‑M2/1‑55 (MQ=255)
                                             tCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgca                                          <  1:965732‑M2/101‑47 (MQ=255)
                                             tCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgca                                          >  2:477041‑M2/1‑55 (MQ=255)
                                               cGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcaga                                        >  1:419071‑M2/1‑53 (MQ=255)
                                                ggCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaa                                       >  2:843257‑M2/1‑52 (MQ=255)
                                                ggCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaa                                       >  2:1255445‑M2/1‑52 (MQ=255)
                                                 gCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaa                                      >  1:557077‑M2/1‑51 (MQ=255)
                                                  cGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaat                                     >  2:1219392‑M2/1‑50 (MQ=255)
                                                     ttCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcat                                  >  1:292707‑M2/1‑47 (MQ=255)
                                                                 gAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgata                      <  2:1149401‑M2/101‑67 (MQ=255)
                                                                   aCAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataag                    >  2:299729‑M2/1‑33 (MQ=255)
                                                                   aCAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataag                    >  1:1225853‑M2/1‑33 (MQ=255)
                                                                    cAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagc                   <  2:806778‑M2/101‑70 (MQ=255)
                                                                    cAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagc                   <  2:836239‑M2/101‑70 (MQ=255)
                                                                    cAGTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagc                   >  1:841106‑M2/1‑32 (MQ=255)
                                                                      gTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgt                 >  2:1557445‑M2/1‑30 (MQ=255)
                                                                      gTGCGCTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgt                 <  1:1231506‑M2/101‑72 (MQ=255)
                                                                          gcTTTGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcg             >  1:1298920‑M2/1‑26 (MQ=255)
                                                                            tttGTTTATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgca           <  2:1449415‑M2/101‑78 (MQ=255)
                                                                                tttATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatatttcagaaatcatgtaggcctgataagcgtagcgcatcag       >  2:542938‑M2/1‑20 (MQ=255)
                                                                                  tATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggc     >  2:618609‑M2/1‑18 (MQ=255)
                                                                                  tATGCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggc     <  1:981747‑M2/101‑84 (MQ=255)
                                                                                     gCCAGATGCGGCGTAaacgccttatccggcctacaaattcttccaaattcaatatattgcagaaatcatgtaggcctgataagcgtagcgcatcaggcaat  <  2:875025‑M2/101‑87 (MQ=255)
                                                                                                   |                                                                                      
AAGTGCAGCGGCATCGGCTACGGCAGCAGCCTGTTTGAAACGTTTTCCGGCGTTTCTCAACGCCGGAACAGTGCGCTTTGTTTATGCCAGATGCGGCGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AACGCC  >  206/3993‑4098

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.