New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 10 1 =0 (0.000)26 (0.620) 12/134 2.9 100% intergenic (–/–) –/– –/–
?210 = 2890 0 (0.000)intergenic (–/–) –/– –/–

CGCGCAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  210/2790‑2923
                                                                                                    |                                                                   
cgcgCAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTa                                                                     >  1:999870/1‑101 (MQ=255)
 gcgcAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAt                                                                    >  1:1379367‑M2/1‑100 (MQ=255)
 gcgcAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAt                                                                    >  2:232918‑M2/1‑100 (MQ=255)
 gcgcAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAt                                                                    >  2:765288‑M2/1‑100 (MQ=255)
   gcAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgc                                                                  <  1:800190‑M2/101‑4 (MQ=255)
    cAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgcc                                                                 <  1:487493‑M2/101‑5 (MQ=255)
        cGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggat                                                             >  1:1157689‑M2/1‑93 (MQ=255)
        cGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggat                                                             >  1:20073‑M2/1‑93 (MQ=255)
         gATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatg                                                            <  1:165896‑M2/101‑10 (MQ=255)
             cAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggc                                                        >  2:342373‑M2/1‑88 (MQ=255)
               aCATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGGGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTGTAtggcggatgcggctc                                                      <  1:351116‑M2/101‑16 (MQ=255)
                cATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtg                                                     <  1:702779‑M2/101‑17 (MQ=255)
                 aTTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtga                                                    <  1:1420236‑M2/101‑18 (MQ=255)
                 aTTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtga                                                    <  1:537260‑M2/101‑18 (MQ=255)
                   ttGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaac                                                  >  1:143724‑M2/1‑82 (MQ=255)
                       cgccgcAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgcct                                              <  2:1709307‑M2/101‑24 (MQ=255)
                        gccgcAGGAGAGTAAATAAAAAGAGGCCCGATGGGGATGCCATCGGGCTAGACTGTTGACAAAGGGCGCTTAGTTTAtgccggatgcggcgtgaacgccct                                             <  1:1296835‑M2/101‑25 (MQ=255)
                            cAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatcc                                         <  1:77952‑M2/101‑29 (MQ=255)
                            cAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatcc                                         >  1:987059‑M2/1‑73 (MQ=255)
                              ggAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccgg                                       >  2:1554939‑M2/1‑71 (MQ=255)
                                   gTAAATAAAAAGAGGCACGATGGTGATGCCATCGGGCTGGAGTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTAACCGGCCtat                                  >  2:594549/1‑99 (MQ=37)
                                      aataaaAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaa                               <  1:1207544‑M2/101‑39 (MQ=255)
                                      aataaaAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaa                               <  2:991461‑M2/101‑39 (MQ=255)
                                        taaaAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaat                             >  2:848937‑M2/1‑61 (MQ=255)
                                        taaaAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatcccgcctacaaaat                             <  1:1369469‑M2/101‑41 (MQ=255)
                                        taaaAAGAGGCCCGATGGCGATGCCATCGGGCTAGACTGGTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtcaacggcttatccgccctacaaaat                             <  2:935029‑M2/101‑41 (MQ=255)
                                         aaaaaGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaatt                            >  1:66539‑M2/1‑60 (MQ=255)
                                         aaaaaGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaatt                            >  1:175247‑M2/1‑60 (MQ=255)
                                           aaaGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgt                          <  1:1126871‑M2/101‑44 (MQ=255)
                                             agagGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgt                        <  1:898252‑M2/101‑46 (MQ=255)
                                              gagGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgta                       >  1:180076‑M2/1‑55 (MQ=255)
                                               agGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggctgcggcgtgaacgccttatccggcctacaaaattgtgtaa                      <  2:1365639‑M2/101‑48 (MQ=255)
                                                ggCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaa                     >  1:1613413‑M2/1‑53 (MQ=255)
                                                ggCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaa                     >  1:1208580‑M2/1‑53 (MQ=255)
                                                   ccGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattc                  <  1:881733‑M2/101‑52 (MQ=255)
                                                     gATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaa                <  2:1706331‑M2/101‑54 (MQ=255)
                                                        ggTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataa             >  2:429802‑M2/1‑45 (MQ=255)
                                                          tGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaatgccttatccggcctacaaaattgtgtaaattcaataaat           <  2:511253‑M2/101‑59 (MQ=255)
                                                          tGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaat           <  1:1543802‑M2/101‑59 (MQ=255)
                                                          tGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaat           >  1:993044‑M2/1‑43 (MQ=255)
                                                            aTGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaattg         <  2:147317‑M2/101‑61 (MQ=255)
                                                              gCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaattgat       >  1:1477743‑M2/1‑39 (MQ=255)
                                                                cATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaattgatcg     >  1:1198453‑M2/1‑37 (MQ=255)
                                                                cATCGGCCTAGACTGTTGACAAAGTGCGCTTATTTTAtgccggatgcggcgtgaacgccttatccggcctccaaaattgtgtaaattcaataaattgatcg     >  1:1612974‑M2/1‑37 (MQ=255)
                                                                 aTCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaattgatcga    <  1:706701‑M2/101‑66 (MQ=255)
                                                                 aTCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaattgatcga    >  1:1617195‑M2/1‑36 (MQ=255)
                                                                   cGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTAtgccggatgcggcgtgaacgccttatccggcctacaaaattgtgtaaattcaataaattgatcgatc  <  1:1122238‑M2/101‑68 (MQ=255)
                                                                                                    |                                                                   
CGCGCAGGCGATGCAACATTTGTCGCCGCAGGAGAGTAAATAAAAAGAGGCCCGATGGTGATGCCATCGGGCTAGACTGTTGACAAAGTGCGCTTAGTTTATGCCGGATGCGGCGTGAACGCCTTATCCGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  210/2790‑2923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.