New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 60 = 246930 (0.000)39 (0.660) 28/200 1.5 75.7% intergenic (–/–) –/– –/–
?66 3183 = 25 (0.430)intergenic (–/–) –/– –/–

ATATTTGTCTGCGCAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  60/24596‑24693
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atatTTGTCTGCGCAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtct                                                                        <  2:1545962‑M1/101‑4 (MQ=255)
      gTCTGCGCAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatcca                                                                  <  1:761751‑M1/101‑10 (MQ=255)
        cTGCGCAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagc                                                                >  2:1487068‑M1/1‑90 (MQ=255)
         tGCGCAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcc                                                               >  1:1233439‑M1/1‑89 (MQ=255)
          gcgcAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcct                                                              >  2:745412‑M1/1‑88 (MQ=255)
          gcgcAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcct                                                              <  1:1570358‑M1/101‑14 (MQ=255)
            gcAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctac                                                            <  1:1055439‑M1/101‑16 (MQ=255)
            gcAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctac                                                            <  2:1165396‑M1/101‑16 (MQ=255)
             cAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacg                                                           <  2:355647‑M1/101‑17 (MQ=255)
             cAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacg                                                           >  2:1544588‑M1/1‑85 (MQ=255)
               gTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatcaagcctacggg                                                         >  2:1511792‑M1/1‑83 (MQ=255)
                tAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacggga                                                        >  2:991541‑M1/1‑82 (MQ=255)
                  aCCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggatt                                                      <  1:266296‑M1/101‑22 (MQ=255)
                        gTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacat                                                >  1:774614‑M1/1‑74 (MQ=255)
                           ccGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgta                                             >  1:1349817‑M1/1‑71 (MQ=255)
                           ccGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgta                                             <  2:1324106‑M1/101‑31 (MQ=255)
                            cGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtag                                            >  2:850945‑M1/1‑70 (MQ=255)
                             gCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagg                                           >  1:55841‑M1/1‑69 (MQ=255)
                             gCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagg                                           >  1:1209973‑M1/1‑69 (MQ=255)
                                   cTGGAGCAGATTGTCGGCCTGTACGCAGCGGGGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggat                                     <  2:418873‑M1/101‑39 (MQ=255)
                                   cTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggat                                     <  2:21289‑M1/101‑39 (MQ=255)
                                    tGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggata                                    >  2:475064‑M1/1‑62 (MQ=255)
                                          aGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgt                              >  2:1300165‑M1/1‑56 (MQ=255)
                                           gATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgtt                             <  1:371244‑M1/101‑47 (MQ=255)
                                           gATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgtt                             <  1:1145329‑M1/101‑47 (MQ=255)
                                            aTTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttc                            <  1:390036‑M1/101‑48 (MQ=255)
                                             ttGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttca                           <  1:269221‑M1/101‑49 (MQ=255)
                                               gTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacg                         >  1:124363‑M1/1‑51 (MQ=255)
                                                tCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgc                        >  2:380986‑M1/1‑50 (MQ=255)
                                                 cGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgcc                       <  2:1233434‑M1/101‑53 (MQ=255)
                                                 cGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgcc                       >  2:1492264‑M1/1‑49 (MQ=255)
                                                 cGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgcc                       >  2:867346‑M1/1‑49 (MQ=255)
                                                     cTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgccgcat                   >  2:437409‑M1/1‑45 (MQ=255)
                                                       gTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggtttgcacatgtagggcggataaggcgttcacgccgcatcc                 <  2:1042827‑M1/101‑59 (MQ=255)
                                                       gTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgccgcatcc                 <  2:1493653‑M1/101‑59 (MQ=255)
                                                       gTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgccgcatcc                 >  1:856017‑M1/1‑43 (MQ=255)
                                                                 gcgcAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgccgcatccgccagtggcg       <  2:376410‑M1/101‑69 (MQ=255)
                                                                   gcAATAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgccgcatccgccagtggcgcg     >  1:1411700‑M1/1‑31 (MQ=255)
                                                                      aTAAATGCCGGATGCGACGCTTGCCGCAtcttatccagcctacgggattgcacatgtagggcggataaggcgttcacgccgcatccggcaaaaatttgatt  >  1:370499‑M1/1‑28 (MQ=255)
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ATATTTGTCTGCGCAGTAACCCGCGTACCGCCAGCCTGGAGCAGATTGTCGGCCTGTACGCAGCGGCGCAATAAATGCCGGATGCGACGCTTGCCGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  60/24596‑24693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.