New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 40 1 =0 (0.000)83 (1.230) 65/200 0.0 100% intergenic (–/–) –/– –/–
?5 1 = 0 (0.000)intergenic (–/–) –/– –/–

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATAT  >  40/1‑98
                                                                                                  |                                                                                                 
ctacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTa                                                                                                 <  1:863000‑M1/3‑1 (MQ=255)
 tacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTaa                                                                                                <  2:608357‑M1/4‑1 (MQ=255)
 tacaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcacttatgggGTaa                                                                                                >  2:1405086‑M1/98‑101 (MQ=255)
  acaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTaaa                                                                                               <  2:195966‑M1/5‑1 (MQ=255)
  acaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTaaa                                                                                               >  2:1528207‑M1/97‑101 (MQ=255)
  acaaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacacttaagttagcgcttatgggGGaaa                                                                                               <  1:89249‑M1/5‑1 (MQ=255)
    aaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAAcc                                                                                             <  2:1272602‑M1/7‑1 (MQ=255)
    aaaacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAAcc                                                                                             <  2:450263‑M1/7‑1 (MQ=255)
      aacgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAAcccc                                                                                           >  2:566302‑M1/93‑101 (MQ=255)
       tcgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAAccccc                                                                                          >  2:1208789‑M1/92‑101 (MQ=255)
       acgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAAccccc                                                                                          >  1:259195‑M1/92‑101 (MQ=255)
        cgcaattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCg                                                                                         >  1:1153229‑M1/91‑101 (MQ=255)
          ctattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCggg                                                                                       >  2:230259‑M1/89‑101 (MQ=255)
          caattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCggg                                                                                       >  1:1553519‑M1/89‑101 (MQ=255)
          caattgaagaacgcgaggcatcgtcttaacgaggaaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCggg                                                                                       <  2:1557349‑M1/13‑1 (MQ=255)
           aattgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGgc                                                                                      <  2:1620433‑M1/14‑1 (MQ=255)
            attgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCccgggag                                                                                     <  1:230259‑M1/15‑3 (MQ=255)
             ttgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGgcgc                                                                                    <  2:933845‑M1/16‑1 (MQ=255)
              tgaagaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgtgGTAAACCCCCGGGcgcg                                                                                   <  1:813499‑M1/17‑1 (MQ=255)
                  gaacgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTcc                                                                               >  2:633977‑M1/81‑101 (MQ=255)
                    acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCtt                                                                             >  2:1318928‑M1/79‑101 (MQ=255)
                      gcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTa                                                                           >  1:607473‑M1/77‑101 (MQ=255)
                       cgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTAt                                                                          <  1:1228120‑M1/26‑1 (MQ=255)
                             atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt                                                                    >  1:501720‑M1/70‑101 (MQ=255)
                             atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt                                                                    <  2:87041‑M1/32‑1 (MQ=255)
                             atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt                                                                    >  1:1578198‑M1/70‑101 (MQ=255)
                             atcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGAt                                                                    >  2:1534286‑M1/70‑101 (MQ=255)
                              tcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATg                                                                   >  1:1327630‑M1/69‑101 (MQ=255)
                              tcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATg                                                                   >  1:1050119‑M1/69‑101 (MQ=255)
                               cgtcttaacgaggcaccgaggggtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCTGGCGCGTTCCTTTATCAAGATGa                                                                  >  2:1697239‑M1/68‑101 (MQ=255)
                                gtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGAc                                                                 >  1:1326132‑M1/67‑101 (MQ=255)
                                  cttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGt                                                               <  1:1220057‑M1/37‑1 (MQ=255)
                                   ttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGtt                                                              <  2:760282‑M1/38‑1 (MQ=255)
                                    taacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTc                                                             <  1:134045‑M1/39‑1 (MQ=255)
                                     aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGATCCTTTATCAAGATGACGTTCg                                                            <  2:1671622‑M1/40‑1 (MQ=255)
                                        gaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAat                                                         >  2:1307150‑M1/59‑101 (MQ=255)
                                         aggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAata                                                        >  2:57‑M1/58‑101 (MQ=255)
                                          ggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAatat                                                       >  1:1359325‑M1/57‑101 (MQ=255)
                                          ggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAatat                                                       >  2:1137985‑M1/57‑101 (MQ=255)
                                              ccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCg                                                   >  2:47691‑M1/53‑101 (MQ=255)
                                               cgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCgg                                                  <  2:830683‑M1/50‑1 (MQ=255)
                                               cgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCgg                                                  <  2:1254568‑M1/50‑1 (MQ=255)
                                                 aggcgtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCa                                                <  1:574940‑M1/52‑1 (MQ=255)
                                                   gcgtctcattcttcagatttttcaacccttaagttagcgcttatgggGTAATCCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAgg                                              >  2:271916‑M1/48‑101 (MQ=255)
                                                     gtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGgcg                                            >  1:1218458‑M1/46‑101 (MQ=255)
                                                     gtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGgcg                                            <  1:835354‑M1/56‑1 (MQ=255)
                                                     gtcgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGgcg                                            <  2:471345‑M1/56‑1 (MQ=255)
                                                       cgcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCa                                          <  2:1408359‑M1/58‑1 (MQ=255)
                                                        gcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAg                                         <  1:990816‑M1/59‑1 (MQ=255)
                                                        gcattcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAg                                         >  1:38962‑M1/43‑101 (MQ=255)
                                                          attcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAgtt                                       <  1:460672‑M1/61‑1 (MQ=255)
                                                           ttcttcaggtggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAgttt                                      <  2:750909‑M1/62‑1 (MQ=255)
                                                            tcttcagatggttcaacccttaagttagcgcttatgggGTAAACCGCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAgtttg                                     >  1:1390577‑M1/39‑101 (MQ=255)
                                                            tcttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAgcttg                                     <  1:1030588‑M1/63‑1 (MQ=255)
                                                             cttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCTGGCAGGCGCAgtttgt                                    <  2:560221‑M1/64‑1 (MQ=255)
                                                              ttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAgtttgtt                                   <  1:1032886‑M1/65‑1 (MQ=255)
                                                              ttcagatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAgtttgtt                                   >  1:644309‑M1/37‑101 (MQ=255)
                                                                 agatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTAt                                <  2:1385717‑M1/68‑1 (MQ=255)
                                                                 agatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTAt                                >  1:762518‑M1/34‑101 (MQ=255)
                                                                 agatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTAt                                <  2:548429‑M1/68‑1 (MQ=255)
                                                                 agatggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTAt                                >  2:862995‑M1/34‑101 (MQ=255)
                                                                     ggttcaacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCa                            <  2:442907‑M1/72‑1 (MQ=255)
                                                                          aacccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAg                       >  1:146024‑M1/25‑101 (MQ=255)
                                                                             ccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCg                    <  1:166184‑M1/80‑1 (MQ=255)
                                                                             ccttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCg                    >  1:699743‑M1/22‑101 (MQ=255)
                                                                              cttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGt                   >  1:87041‑M1/21‑101 (MQ=255)
                                                                              cttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGt                   <  2:786802‑M1/81‑1 (MQ=255)
                                                                              cttaagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGt                   >  1:82400‑M1/21‑101 (MQ=255)
                                                                                 aagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGa                >  1:1579142‑M1/18‑101 (MQ=255)
                                                                                 aagttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGa                <  1:1107884‑M1/84‑1 (MQ=255)
                                                                                  agttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAg               >  1:933850‑M1/17‑101 (MQ=255)
                                                                                  agttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAg               >  2:595849‑M1/17‑101 (MQ=255)
                                                                                  agttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAg               >  2:1349258‑M1/17‑101 (MQ=255)
                                                                                  agttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAAGCGTTGAg               <  2:970926‑M1/85‑1 (MQ=255)
                                                                                  agttagagcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAg               <  1:1112310‑M1/85‑1 (MQ=255)
                                                                                   gttagcgcttatgggGTAAACTCCCGGGCGCGTTCCTCTATCAAGATGGCGTTCGAATATGCCGGCAGGGGCAGTTTGTTTATTCCAGAAAGGCGTTGAgc              >  2:1174710‑M1/16‑101 (MQ=255)
                                                                                   gttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAgc              >  2:1260755‑M1/16‑101 (MQ=255)
                                                                                    ttagcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAgcg             <  1:551312‑M1/87‑1 (MQ=255)
                                                                                       gcgcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGt          <  2:555046‑M1/90‑1 (MQ=255)
                                                                                         gcttatgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTAt        >  1:830688‑M1/10‑101 (MQ=255)
                                                                                             atgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAat    >  2:114413‑M1/6‑101 (MQ=255)
                                                                                             atgggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAat    >  2:1045746‑M1/6‑101 (MQ=255)
                                                                                               gggGTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAatat  >  2:69535‑M1/4‑101 (MQ=255)
                                                                                                  |                                                                                                 
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTAAACCCCCGGGCGCGTTCCTTTATCAAGATGACGTTCGAATATGCCGGCAGGCGCAGTTTGTTTATTCCAGAAAGGCGTTGAGCGCGTATGAATAT  >  40/1‑98

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.