New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 3 52189 =5 (0.080)53 (0.820) 41/194 0.6 57.3% intergenic (–/–) –/– –/–
?5 = 1340 74 (1.090)intergenic (–/–) –/– –/–

CAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCGATTGCGAG  >  3/52089‑52289
                                                                                                    |                                                                                                    
cAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTgggg                                                                                                      <  1:394854/101‑1 (MQ=255)
 aGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAACCCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTggggg                                                                                                     <  1:1439870/101‑1 (MQ=255)
   aTCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGga                                                                                                   <  2:482153/101‑1 (MQ=255)
    tCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGgag                                                                                                  >  2:120065/1‑101 (MQ=255)
    atgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGgag                                                                                                  <  1:1181596‑M1/5‑1 (MQ=255)
    atgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGgag                                                                                                  <  2:800232‑M1/5‑1 (MQ=255)
     tgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGgaga                                                                                                 >  2:555473‑M1/96‑101 (MQ=255)
     tgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGgaga                                                                                                 >  1:37685‑M1/96‑101 (MQ=255)
     tgggccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGgaga                                                                                                 >  2:81443‑M1/96‑101 (MQ=255)
       ccATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGAtc                                                                                               >  1:971975/1‑101 (MQ=255)
         ccagaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGAtctc                                                                                             >  1:878425‑M1/92‑101 (MQ=255)
            gaattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTcccc                                                                                          <  1:431652‑M1/13‑1 (MQ=255)
             aattgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCa                                                                                         <  1:1120758‑M1/14‑1 (MQ=255)
             aCGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCat                                                                                         <  1:139911‑M1/101‑3 (MQ=255)
              cgcgGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCata                                                                                        >  1:1412094‑M1/1‑98 (MQ=255)
              attgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCAc                                                                                        >  1:1028021‑M1/87‑101 (MQ=255)
              attgctgaccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCAc                                                                                        <  2:946974‑M1/15‑1 (MQ=255)
                cgGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataag                                                                                      <  1:830447‑M1/101‑6 (MQ=255)
                  ggggTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcg                                                                                    >  1:1678630‑M1/1‑94 (MQ=255)
                     gtggtTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgcta                                                                                 >  1:6055‑M1/1‑91 (MQ=255)
                     gtggtTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgcta                                                                                 <  2:1569047‑M1/101‑11 (MQ=255)
                     accagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCggg                                                                                 >  2:267720‑M1/80‑101 (MQ=255)
                      ccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGc                                                                                >  2:646202‑M1/79‑101 (MQ=255)
                      ccagttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGc                                                                                >  1:1461865‑M1/79‑101 (MQ=255)
                        agttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCtt                                                                              >  1:1562146‑M1/77‑101 (MQ=255)
                        agttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCtt                                                                              <  1:1283774‑M1/25‑1 (MQ=255)
                         gttatcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTtc                                                                             <  2:1584432‑M1/26‑1 (MQ=255)
                          tCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaactta                                                                            <  2:435985‑M1/101‑16 (MQ=255)
                          tCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaactta                                                                            >  1:960888‑M1/1‑86 (MQ=255)
                            atcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTtcagt                                                                          <  2:1124133‑M1/29‑1 (MQ=255)
                            atcgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTtcagt                                                                          <  1:1268924‑M1/29‑1 (MQ=255)
                              cgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTtcagtca                                                                        >  2:1176492‑M1/71‑101 (MQ=255)
                              cgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTtcagtca                                                                        >  1:66088‑M1/71‑101 (MQ=255)
                              cgtgagagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTtcagtca                                                                        <  1:1132931‑M1/31‑1 (MQ=255)
                                  agagtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGaa                                                                    >  2:1002595‑M1/67‑101 (MQ=255)
                                     gtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAAcc                                                                 >  2:1153046‑M1/64‑101 (MQ=255)
                                     gtaattcatcggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAAcc                                                                 >  1:384841‑M1/64‑101 (MQ=255)
                                        ggTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatc                                                              <  2:562360‑M1/101‑30 (MQ=255)
                                         gTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggatgaaccatct                                                             >  2:82169‑M1/1‑71 (MQ=255)
                                           tAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctga                                                           <  2:1482597‑M1/101‑33 (MQ=255)
                                           tAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctga                                                           >  1:1101838‑M1/1‑69 (MQ=255)
                                            aaaaaCCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaa                                                          >  1:1167898‑M1/1‑68 (MQ=255)
                                             aaaaCCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaag                                                         <  1:668406‑M1/101‑35 (MQ=255)
                                             aaaaCCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaag                                                         <  2:942059‑M1/101‑35 (MQ=255)
                                              cggcacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAagag                                                        >  1:1606130‑M1/55‑101 (MQ=255)
                                              aaaCCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaaga                                                        <  1:944499‑M1/101‑36 (MQ=255)
                                                aCCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaat                                                      >  1:1139781‑M1/1‑64 (MQ=255)
                                                 cacgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGgcg                                                     <  2:595097‑M1/50‑1 (MQ=255)
                                                  ccGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgc                                                    <  1:1346299‑M1/101‑40 (MQ=255)
                                                   cgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCa                                                   <  1:246448‑M1/52‑1 (MQ=255)
                                                   cgttaaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCa                                                   >  1:1709242‑M1/50‑101 (MQ=255)
                                                     cgACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgac                                                 <  2:1525315‑M1/101‑43 (MQ=255)
                                                     cgACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgac                                                 >  1:953866‑M1/1‑59 (MQ=255)
                                                      taaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAg                                                >  2:616765‑M1/47‑101 (MQ=255)
                                                       aaatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAgt                                               >  2:1358584‑M1/46‑101 (MQ=255)
                                                        aatcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAgtg                                              <  1:1571236‑M1/57‑1 (MQ=255)
                                                         atcatatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAgtgt                                             >  2:616974‑M1/44‑101 (MQ=255)
                                                          ggCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctc                                            >  1:862884‑M1/1‑54 (MQ=255)
                                                            cTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg                                          >  2:1086131‑M1/1‑52 (MQ=255)
                                                            cTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcgg                                          >  2:271041‑M1/1‑52 (MQ=255)
                                                            atatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGtgct                                          <  1:388630‑M1/61‑1 (MQ=255)
                                                             tatcaggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGtgctg                                         >  1:512659‑M1/40‑101 (MQ=255)
                                                             tGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGGGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggt                                         >  2:188756‑M1/1‑51 (MQ=255)
                                                               tATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgc                                       <  1:251486‑M1/101‑53 (MQ=255)
                                                                 aggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTg                                     <  2:1030344‑M1/66‑1 (MQ=255)
                                                                 aggcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTg                                     <  2:543509‑M1/66‑1 (MQ=255)
                                                                   gcgtaataccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGcc                                   <  2:981661‑M1/68‑1 (MQ=255)
                                                                         taccacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTa                             <  1:1536789‑M1/74‑1 (MQ=255)
                                                                         tGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaaga                             >  1:902613‑M1/1‑39 (MQ=255)
                                                                          gCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagac                            <  2:1356987‑M1/101‑64 (MQ=255)
                                                                          accacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTaa                            <  1:1095448‑M1/75‑1 (MQ=255)
                                                                            cacaacccttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAAt                          <  1:482428‑M1/77‑1 (MQ=255)
                                                                             tGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgat                         <  2:6055‑M1/101‑67 (MQ=255)
                                                                             tGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgat                         <  1:721102‑M1/101‑67 (MQ=255)
                                                                                   cGAGCGCGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcg                   >  2:1573171‑M1/1‑29 (MQ=255)
                                                                                    ttaagttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAActggct                  <  2:72491‑M1/85‑1 (MQ=255)
                                                                                      gcgcGAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgt                <  1:209908‑M1/101‑76 (MQ=255)
                                                                                         ttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAg             >  2:467021‑M1/12‑101 (MQ=255)
                                                                                         ttagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAg             >  2:431647‑M1/12‑101 (MQ=255)
                                                                                         ttagagcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAg             >  1:1105613‑M1/12‑101 (MQ=255)
                                                                                          tagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAgg            >  1:679110‑M1/11‑101 (MQ=255)
                                                                                          tagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAgg            <  1:1351710‑M1/91‑1 (MQ=255)
                                                                                          tagcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAgg            <  2:439313‑M1/91‑1 (MQ=255)
                                                                                          gAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttctt            >  1:1336074‑M1/1‑22 (MQ=255)
                                                                                          gAAGGGTGGGGGGAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttctt            >  2:658122‑M1/1‑22 (MQ=255)
                                                                                           agcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGc           <  2:39420‑M1/92‑1 (MQ=255)
                                                                                            gcgcttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCg          <  1:1489859‑M1/93‑1 (MQ=255)
                                                                                               cttatGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCGAtt       >  1:72001‑M1/6‑101 (MQ=255)
                                                                                                  atGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCGATTGCg    <  1:231821‑M1/99‑1 (MQ=255)
                                                                                                  atGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCGATTGCg    <  2:1110955‑M1/99‑1 (MQ=255)
                                                                                                   tGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCGATTGCGa   <  1:1607420‑M1/100‑1 (MQ=255)
                                                                                                    gggAGATCTCCCataagcgctaacttaagggttgaaccatctgaagaatgcgacgcctcggtgcctcgttaagacgatgcctcgcgttcttcaattgcgtt  >  1:795850‑M1/1‑12 (MQ=255)
                                                                                                    |                                                                                                    
CAGATCCCCATGGACGCGGGGGTGGTTCTGCGCGACAGGCGGTTAAAAACCCGCGACGGGCTGTATGTTTGCCTGCGTGAAGGCGAGCGCGAAGGGTGGGGGGAGATCTCCCCACTGCCGGGCTTCAGTCAGGAAACCTGGGAAGAGGCGCAAAGTGTGCTGCTTGCCTGGGTAAATAACTGGCTGGCAGGCGATTGCGAG  >  3/52089‑52289

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.