New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 19 = 1687710 (0.160)55 (0.070)
+GGTGATGCTGCCAACT
43/168 0.3 92.9% intergenic (–/–) –/– –/–
?223 = 698 0 (0.000)intergenic (–/–) –/– –/–

CGTTGGCACCCGCCGCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCG  >  19/16777‑16975
                                                                                                    |                                                                                                  
cGTTGGCACCCGCCGCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATg                                                                                                    <  1:472827/101‑1 (MQ=255)
 gTTGGCACCCGCCGCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGg                                                                                                   <  1:1135756‑M1/101‑2 (MQ=255)
  ttGGCACCCGCCGCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGgg                                                                                                  <  1:1532574‑M1/101‑3 (MQ=255)
   tGGCACCCGCCGCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGTaa                                                                                                 >  2:692858/1‑101 (MQ=255)
         ccgccgCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgct                                                                                           <  2:1391441‑M1/101‑10 (MQ=255)
          cgccgcGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctg                                                                                          >  2:978534‑M1/1‑91 (MQ=255)
           gccgcGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgc                                                                                         >  1:649098‑M1/1‑90 (MQ=255)
               cgATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaac                                                                                     >  1:1282517‑M1/1‑86 (MQ=255)
                gATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaact                                                                                    >  1:855071‑M1/1‑85 (MQ=255)
                 aTAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaactt                                                                                   >  2:568907‑M1/1‑84 (MQ=255)
                 aTAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaactt                                                                                   >  1:794072‑M1/1‑84 (MQ=255)
                    aCTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttact                                                                                <  1:420003‑M1/101‑21 (MQ=255)
                    aCTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttact                                                                                >  1:704323‑M1/1‑81 (MQ=255)
                    aCTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttact                                                                                >  1:790630‑M1/1‑81 (MQ=255)
                    aCTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttact                                                                                <  1:997703‑M1/101‑21 (MQ=255)
                    aCTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttact                                                                                >  1:328089‑M1/1‑81 (MQ=255)
                       ttttCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgat                                                                             >  2:894175‑M1/1‑78 (MQ=255)
                        tttCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatt                                                                            <  1:750849‑M1/101‑25 (MQ=255)
                          tCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgattta                                                                          <  1:139764‑M1/101‑27 (MQ=255)
                          tCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgattta                                                                          <  1:122504‑M1/101‑27 (MQ=255)
                           cAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttag                                                                         <  1:873931‑M1/101‑28 (MQ=255)
                             aGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacctactgatttagtg                                                                       >  2:642379‑M1/1‑72 (MQ=255)
                               attattATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgta                                                                     >  1:767735‑M1/1‑70 (MQ=255)
                                ttattaTCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtat                                                                    >  1:1457668‑M1/1‑69 (MQ=255)
                                ttattaTCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtat                                                                    >  2:25663‑M1/1‑69 (MQ=255)
                                  attatCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatga                                                                  >  1:229457‑M1/1‑67 (MQ=255)
                                  attatCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatga                                                                  <  2:96037‑M1/101‑35 (MQ=255)
                                  attatCGCGATCTGTTGCTGGGCCTAACGTGGGAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatga                                                                  >  2:392612‑M1/1‑67 (MQ=255)
                                    tatCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatg                                                                <  1:568912‑M1/101‑37 (MQ=255)
                                    tatCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatg                                                                <  2:112584‑M1/101‑37 (MQ=255)
                                        gcgATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgt                                                            <  1:973969‑M1/101‑41 (MQ=255)
                                         cgATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtt                                                           <  1:1456877‑M1/101‑42 (MQ=255)
                                          gATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                          >  1:1069569‑M1/1‑59 (MQ=255)
                                          gATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgttt                                                          <  1:894180‑M1/101‑43 (MQ=255)
                                           aTCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttt                                                         <  1:854816‑M1/101‑44 (MQ=255)
                                             cTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttg                                                       >  1:1282532‑M1/1‑56 (MQ=255)
                                               gTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgag                                                     >  1:1403689‑M1/1‑54 (MQ=255)
                                                ttGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgagg                                                    <  2:109035‑M1/101‑49 (MQ=255)
                                                 tGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggt                                                   <  2:1383312‑M1/101‑50 (MQ=255)
                                                  gCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtg                                                  >  1:920900‑M1/1‑51 (MQ=255)
                                                   cTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc                                                 >  2:177713‑M1/1‑50 (MQ=255)
                                                   cTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgc                                                 <  1:855400‑M1/101‑52 (MQ=255)
                                                     gggCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctc                                               <  2:649093‑M1/101‑54 (MQ=255)
                                                         cTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                           >  2:914880‑M1/1‑44 (MQ=255)
                                                         cTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggggatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagt                                           >  1:365936‑M1/1‑44 (MQ=255)
                                                          tAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtg                                          >  2:406407‑M1/1‑43 (MQ=255)
                                                           aaCGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtgg                                         >  1:638178‑M1/1‑42 (MQ=255)
                                                              gTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt                                      >  2:1305314‑M1/1‑39 (MQ=255)
                                                              gTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt                                      >  2:252726‑M1/1‑39 (MQ=255)
                                                                tgtAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttct                                    <  2:749442‑M1/100‑65 (MQ=255)
                                                                  tAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgt                                  <  1:114320‑M1/101‑67 (MQ=255)
                                                                    aCGATTTTTGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgttt                                >  1:1390581‑M1/1‑33 (MQ=255)
                                                                         ttttGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                           >  1:653814‑M1/1‑28 (MQ=255)
                                                                         ttttGTTCTGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc                           >  1:1258106‑M1/1‑28 (MQ=255)
                                                                                 tGCGAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtcc                   <  2:1305704‑M1/101‑82 (MQ=255)
                                                                                  agtcattacccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTaa                  >  1:1362287/11‑101 (MQ=255)
                                                                                   gtcattacccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAAt                 <  2:414037/92‑1 (MQ=255)
                                                                                    gAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccttc                >  1:1144997‑M1/1‑17 (MQ=255)
                                                                                    gAAGCCTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctc                >  2:1436594‑M1/1‑17 (MQ=255)
                                                                                     cattacccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAAtct               >  2:223047/8‑101 (MQ=255)
                                                                                     cattacccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAAtct               >  1:737185/8‑101 (MQ=255)
                                                                                      attacccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAAtctc              >  1:1284143/7‑101 (MQ=255)
                                                                                        tacccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCAt            <  2:270651/97‑1 (MQ=255)
                                                                                        ccTTCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgt            >  1:601028‑M1/1‑13 (MQ=255)
                                                                                          ttCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttc          <  2:1069564‑M1/101‑91 (MQ=255)
                                                                                           tCTGGACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttca         <  1:1400026‑M1/101‑92 (MQ=255)
                                                                                           ccTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCg         >  2:1391381/2‑101 (MQ=255)
                                                                                              ggACATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagct      <  2:549172‑M1/101‑95 (MQ=255)
                                                                                              ggACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGAt      <  2:92911/101‑1 (MQ=255)
                                                                                              ggACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGAt      >  2:957816/1‑101 (MQ=255)
                                                                                                 cATGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctact   <  2:1457662‑M1/101‑98 (MQ=255)
                                                                                                  aTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg  <  1:120514‑M1/101‑99 (MQ=255)
                                                                                                  aTGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactg  >  2:589722‑M1/1‑3 (MQ=255)
                                                                                                    |                                                                                                  
CGTTGGCACCCGCCGCGATAACTTTTTCAAGATTATTATCGCGATCTGTTGCTGGGCCTAACGTGGTAACGATTTTTGTTCTGCGAAGCCTTCTGGACATGTAATACTCCGTTGACTGAAACAACCAGGTGTTGCTTGAACATGAAATCCGAATGAAATAACGCCGCGATGGCGATAAATTAATCTCATTCGGATGTCG  >  19/16777‑16975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.