New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 187 6331 =0 (0.000)73 (0.050) 56/196 0.1 100% intergenic (–/–) –/– –/–
?222 = 1441 0 (0.000)intergenic (–/–) –/– –/–

AGAGAGCGATATAATAGCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGATATTTTACTATCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCGATGATTGT  >  187/6235‑6431
                                                                                                |                                                                                                    
agaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAAcc                                                                                                  >  1:672616‑M1/97‑101 (MQ=255)
agaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAAcc                                                                                                  >  2:1342928‑M1/97‑101 (MQ=255)
agaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAAcc                                                                                                  <  2:385612‑M1/5‑1 (MQ=255)
agaattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAAcc                                                                                                  >  1:504109‑M1/97‑101 (MQ=255)
  aattagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCg                                                                                                <  1:401306‑M1/7‑1 (MQ=255)
   attagcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGa                                                                                               <  1:1332973‑M1/8‑1 (MQ=255)
      agcctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGc                                                                                            <  1:1044759‑M1/11‑1 (MQ=255)
        cctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGccc                                                                                          <  2:1590917‑M1/13‑1 (MQ=255)
        cctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGccc                                                                                          <  2:471788‑M1/13‑1 (MQ=255)
         ctgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGcccc                                                                                         <  1:1433116‑M1/14‑1 (MQ=255)
          tgaaattaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGccccc                                                                                        <  2:292858‑M1/15‑1 (MQ=255)
              attaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCtata                                                                                    <  1:53883‑M1/19‑1 (MQ=255)
               ttaaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTatat                                                                                   >  2:392543‑M1/82‑101 (MQ=255)
                taaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATg                                                                                  <  2:28151‑M1/21‑1 (MQ=255)
                 aaaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGc                                                                                 <  1:1252399‑M1/22‑1 (MQ=255)
                  aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCt                                                                                >  1:923175‑M1/79‑101 (MQ=255)
                  aaaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCt                                                                                >  1:956986‑M1/79‑101 (MQ=255)
                   aaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTg                                                                               >  2:1342006‑M1/78‑101 (MQ=255)
                   aaggtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTg                                                                               >  1:775055‑M1/78‑101 (MQ=255)
                      gtctgactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAac                                                                            <  1:1522531‑M1/27‑1 (MQ=255)
                          gactccaattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACAt                                                                        >  2:1545954‑M1/71‑101 (MQ=255)
                               caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTaga                                                                   >  1:237453‑M1/66‑101 (MQ=255)
                               caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTaga                                                                   >  2:485537‑M1/66‑101 (MQ=255)
                               caattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTaga                                                                   >  1:1190931‑M1/66‑101 (MQ=255)
                                aattgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTagag                                                                  <  1:684019‑M1/37‑1 (MQ=255)
                                 gatctatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGt                                                                 >  1:610744‑M1/64‑101 (MQ=255)
                                 attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGt                                                                 <  1:1435760‑M1/38‑1 (MQ=255)
                                 attgaatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGt                                                                 >  2:559256‑M1/64‑101 (MQ=255)
                                     aatatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCct                                                             >  2:1118926‑M1/60‑101 (MQ=255)
                                      atatcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGtagagtagatc                                                            <  2:610739‑M1/43‑6 (MQ=255)
                                        atcggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCtt                                                          >  1:232354‑M1/57‑101 (MQ=255)
                                          cggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTAc                                                        <  1:1010236‑M1/47‑1 (MQ=255)
                                           ggaatcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACt                                                       >  2:1343956‑M1/54‑101 (MQ=255)
                                              atcagacctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGAc                                                    <  1:775774‑M1/51‑1 (MQ=255)
                                               tcagacctatagtcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTactgccc                                                   >  2:131679‑M1/50‑98 (MQ=255)
                                                   acctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTaa                                               >  1:879720‑M1/46‑101 (MQ=255)
                                                    cctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAg                                              >  1:1234232‑M1/45‑101 (MQ=255)
                                                    cctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAg                                              >  2:1252394‑M1/45‑101 (MQ=255)
                                                     ctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAgg                                             <  1:668825‑M1/58‑1 (MQ=255)
                                                     ctatatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAgg                                             >  2:216746‑M1/44‑101 (MQ=255)
                                                        tatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGGCCCTTATTGACCGTAAGGTCa                                          <  2:1070204‑M1/61‑1 (MQ=255)
                                                        tatgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCa                                          <  2:1162057‑M1/61‑1 (MQ=255)
                                                         atgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCaa                                         >  2:1600888‑M1/40‑101 (MQ=255)
                                                         atgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGCCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCaa                                         <  2:1112776‑M1/62‑1 (MQ=255)
                                                          tgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAg                                        <  1:184444‑M1/63‑1 (MQ=255)
                                                          tgcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAg                                        <  1:600215‑M1/63‑1 (MQ=255)
                                                           gcctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAgg                                       >  1:28151‑M1/38‑101 (MQ=255)
                                                            cctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGga                                      <  2:315918‑M1/65‑1 (MQ=255)
                                                             ctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGgag                                     <  2:979424‑M1/66‑1 (MQ=255)
                                                             ctcgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGgag                                     <  1:1675460‑M1/66‑1 (MQ=255)
                                                               cgtgtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGagaa                                   <  1:8211‑M1/68‑1 (MQ=255)
                                                                  gtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAagag                                <  2:1583002‑M1/71‑1 (MQ=255)
                                                                  gtttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAagag                                <  1:1236068‑M1/71‑1 (MQ=255)
                                                                    ttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAagagag                              <  1:235494‑M1/73‑1 (MQ=255)
                                                                    ttaactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAagagag                              >  2:498703‑M1/29‑101 (MQ=255)
                                                                     taactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGc                             <  2:646633‑M1/74‑1 (MQ=255)
                                                                     taactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGc                             >  1:184456‑M1/28‑101 (MQ=255)
                                                                     taacgctccaactttttggggacagtaCAACCCGAGGACCCCTATATGCTGAACACATGTAGAGTGCATCTTACTGACCGTAAGGTCAAGGAGAAGAGAGc                             <  2:1706054‑M1/74‑1 (MQ=255)
                                                                      aactgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCa                            >  2:882737‑M1/27‑101 (MQ=255)
                                                                         tgtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATg                         <  1:1574234‑M1/78‑1 (MQ=255)
                                                                          gtccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGa                        >  1:1583008‑M1/23‑101 (MQ=255)
                                                                           tccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGaa                       >  1:979429‑M1/22‑101 (MQ=255)
                                                                            ccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAag                      <  1:186185‑M1/81‑1 (MQ=255)
                                                                            ccaactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAag                      >  2:600210‑M1/21‑101 (MQ=255)
                                                                             caactttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAagc                     >  2:589701‑M1/20‑101 (MQ=255)
                                                                                ctttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAagcagc                  <  2:1590726‑M1/85‑1 (MQ=255)
                                                                                ctttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAagcagc                  <  1:1194159‑M1/85‑1 (MQ=255)
                                                                                ctttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAagcagc                  <  2:1698239‑M1/85‑1 (MQ=255)
                                                                                 tttttggggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAgcagca                 >  2:711096‑M1/16‑101 (MQ=255)
                                                                                        ggtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCg          >  2:1332967‑M1/9‑101 (MQ=255)
                                                                                         gtcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCga         <  1:1091463‑M1/94‑1 (MQ=255)
                                                                                          tcagtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCgat        <  2:1237287‑M1/95‑1 (MQ=255)
                                                                                            agtaCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCgatga      <  1:1607421‑M1/97‑1 (MQ=255)
                                                                                                CAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCGATGATTGt  <  2:796892‑M1/101‑1 (MQ=255)
                                                                                                CAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCGATGATTGt  <  1:555666‑M1/101‑1 (MQ=255)
                                                                                                |                                                                                                    
AGAGAGCGATATAATAGCGGCGGGTGCTTGAGGCTATCTGTCTCAGGCATTAGCTGAACGGCAGATAGAGAAAAGCCCCGAGTGATATTTTACTATCAACCCGAGGCCCCCTATATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATGAAGCAGCATAAGGCGATGATTGT  >  187/6235‑6431

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.