| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 187 | 1 = | 0 (0.000) | 62 (0.070) | 47/200 | 0.4 | 100% | intergenic (–/–) | –/– | –/– |
| ? | 223 | = 698 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCCACAGC > 187/1‑101 | gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAaga > 2:1032538‑M1/81‑101 (MQ=255)gtagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAaga > 2:236455‑M1/81‑101 (MQ=255) tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAagag > 2:1139872‑M1/80‑101 (MQ=255) tagctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAagag > 1:1227445‑M1/80‑101 (MQ=255) agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAgaga > 2:884778‑M1/79‑101 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGAt > 2:379876‑M1/78‑101 (MQ=255) tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTa > 2:1594790‑M1/76‑101 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAg > 1:1170791‑M1/74‑101 (MQ=255) caggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGat > 1:294255‑M1/72‑101 (MQ=255) aggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGata > 2:762495‑M1/71‑101 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGatat > 1:793710‑M1/70‑101 (MQ=255) ggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGatat > 1:1542864‑M1/70‑101 (MQ=255) ggaggaacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGatat > 2:986870‑M1/70‑101 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGatatat > 1:847390‑M1/68‑101 (MQ=255) acagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAg < 2:1540825‑M1/38‑1 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAAt > 1:476738‑M1/61‑101 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAAt > 2:1074939‑M1/61‑101 (MQ=255) gctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAAt < 2:267179‑M1/41‑1 (MQ=255) atagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTa < 2:695930‑M1/45‑1 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTAt < 1:83599‑M1/46‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGaa < 1:855685‑M1/49‑1 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATTCTATGAAAAATTCg < 1:838613‑M1/56‑1 (MQ=255) agccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCg > 1:1566981‑M1/46‑101 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGt < 2:146560‑M1/57‑1 (MQ=255) actggagcacctcaaaaacgccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTaa > 1:271585‑M1/42‑101 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTaa < 2:1268571‑M1/60‑1 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTaa > 2:389933‑M1/42‑101 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAg < 2:527389‑M1/61‑1 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAg < 2:272744‑M1/61‑1 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCt > 1:695935‑M1/37‑101 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCtt > 2:1495551‑M1/36‑101 (MQ=255) acctcaaaaacaccatcatacactaaatgagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTaa < 2:1070525‑M1/68‑1 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTaa < 1:773999‑M1/68‑1 (MQ=255) cctcaaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTaaa < 1:1642598‑M1/69‑1 (MQ=255) caaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGc > 1:477407‑M1/30‑101 (MQ=255) caaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGc < 1:135949‑M1/72‑1 (MQ=255) aaaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCa > 2:217019‑M1/29‑101 (MQ=255) aaaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCaa > 2:17877‑M1/28‑101 (MQ=255) aaacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCaaa < 2:1485610‑M1/75‑1 (MQ=255) aacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAAc > 1:1222544‑M1/26‑101 (MQ=255) aacaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAAc > 1:1058279‑M1/26‑101 (MQ=255) acaccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACt < 2:1145499‑M1/77‑1 (MQ=255) caccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACtt > 1:815383‑M1/24‑101 (MQ=255) caccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGAGTAGGATATATCAAGAATGCTATCAAAAATTCGTTAAGTTCTTAAAGGCAAACtt > 2:270733‑M1/24‑101 (MQ=255) accatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTc > 1:701674‑M1/23‑101 (MQ=255) ccatcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCa > 2:1609199‑M1/22‑101 (MQ=255) catcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCaa < 1:1036396‑M1/81‑1 (MQ=255) catcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCaa < 1:1657086‑M1/81‑1 (MQ=255) catcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCaa < 1:789581‑M1/81‑1 (MQ=255) atcatacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAAc < 1:298951‑M1/82‑1 (MQ=255) tacactaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCgg < 2:95595‑M1/86‑1 (MQ=255) ctaaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAat < 2:588078‑M1/90‑1 (MQ=255) taaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAata < 2:1602035‑M1/91‑1 (MQ=255) taaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAata > 2:298951‑M1/11‑101 (MQ=255) taaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAata > 1:527736‑M1/11‑101 (MQ=255) aaatcagtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAatat > 1:680260‑M1/10‑101 (MQ=255) agtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCca < 2:473844‑M1/97‑1 (MQ=255) gtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCcac < 1:364156‑M1/98‑1 (MQ=255) gtaAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCcac < 2:437718‑M1/98‑1 (MQ=255) aAGTTGGCAGCATCGCCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCCACAg > 2:793451‑M1/2‑101 (MQ=255) aAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCCACAg > 1:1351760‑M1/2‑101 (MQ=255) aAGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCCACAg < 2:640638‑M1/100‑1 (MQ=255) aGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCCACAGc > 1:500263/1‑101 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTTGGCAGCATCACCGAAGAGATTAAGATATATCAAGAATGCTATGAAAAATTCGTTAAGTTCTTAAAGGCAAACTTCAACCCGGAAATATACCCACAGC > 187/1‑101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |