| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 176 | = 7365 | 0 (0.000) | 38 (0.620) | 26/200 | 2.3 | 54.3% | intergenic (–/–) | –/– | –/– |
| ? | 91 | = 8425 | 64 (1.040) | intergenic (–/–) | –/– | –/– | |||||
TTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 176/7265‑7365 | ttAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCt < 1:1275574/101‑1 (MQ=255) aaaTTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtg > 2:1364801‑M1/1‑99 (MQ=255) tatGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcgg < 2:1093101‑M1/101‑13 (MQ=255) atGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggc > 2:568695‑M1/1‑88 (MQ=255) atGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggc < 1:1417193‑M1/101‑14 (MQ=255) tGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcg < 2:1170376‑M1/101‑15 (MQ=255) ggATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgt > 2:1657584‑M1/1‑86 (MQ=255) aTAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgg > 1:577638‑M1/1‑84 (MQ=255) aaaTTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaac > 1:974367‑M1/1‑82 (MQ=255) aaTTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacg > 2:1001390‑M1/1‑81 (MQ=255) cGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttt > 1:75620‑M1/1‑76 (MQ=255) ggAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttttccggc > 2:537499‑M1/1‑70 (MQ=255) gAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcc > 1:365461‑M1/1‑69 (MQ=255) gAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcc > 2:1316899‑M1/1‑69 (MQ=255) gAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcggggacgccctttcccgcc > 2:914989‑M1/1‑69 (MQ=255) ttaattCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacaccttatccggcctac > 1:1269384‑M1/1‑66 (MQ=255) cgcgAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagc < 2:1082316‑M1/101‑42 (MQ=255) aagaaAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgc > 1:273478‑M1/1‑56 (MQ=255) aaaaaaCGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatat < 2:1681328‑M1/101‑57 (MQ=255) aaaaCGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatat > 1:1148350‑M1/1‑43 (MQ=255) aaaaCGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatat < 1:1364807‑M1/101‑59 (MQ=255) aaaaCGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatat > 2:835928‑M1/1‑43 (MQ=255) aaaCGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggccggaaacccttatacggcctacaaaaaaacgcaaactcaatatatt > 2:905751‑M1/1‑42 (MQ=255) cgcTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagag < 2:610720‑M1/101‑66 (MQ=255) cTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagat < 2:1719542‑M1/101‑68 (MQ=255) tGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatc < 2:116378‑M1/101‑69 (MQ=255) tGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatc < 1:80149‑M1/101‑69 (MQ=255) tGAACGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaaacacccaaagtcaaattattgcggagatc > 1:1566280‑M1/1‑33 (MQ=255) aaCGCGGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcat < 1:835933‑M1/101‑71 (MQ=255) cgcgGCGTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgt < 2:974362‑M1/101‑73 (MQ=255) cggcgTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtag < 2:1510244‑M1/101‑75 (MQ=255) cggcgTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtag < 1:1237033‑M1/101‑75 (MQ=255) gcgTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggc < 2:199668‑M1/101‑77 (MQ=255) cgTTTTGGATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggcc > 1:799536‑M1/1‑24 (MQ=255) gATTGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataag > 1:208611‑M1/1‑17 (MQ=255) ttGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcg > 1:777209‑M1/1‑15 (MQ=255) tGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgt < 1:1316905‑M1/101‑88 (MQ=255) tGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgt < 1:1205191‑M1/101‑88 (MQ=255) tGTTTGCTGTTTCTtgccggatgcggcgtgaacgccttatccggcctacaaaagcacgcaaactcaatatattgcagagatcatgtaggcctgataagcgt > 2:1527867‑M1/1‑14 (MQ=255) | TTAAATTTATTTTATGGATAAATTGCGAAGCGGAATTAATTCGCGAAGAAAAGCAGAAAAAACGCCGCTGAACGCGGCGTTTTGGATTGTTTGCTGTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > 176/7265‑7365 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |