New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 15 = 490400 (0.000)60 (1.350)
+GGCAATCGAGCACAA
44/170 0.0 78.3% intergenic (–/–) –/– –/–
?190 195 = 39 (0.640)intergenic (–/–) –/– –/–

CAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  15/48940‑49040
                                                                                                    |                                                                                                    
cAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATcc                                                                                                      >  1:306824/1‑101 (MQ=255)
 aGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCg                                                                                                     >  1:356574‑M1/1‑100 (MQ=255)
           agaCGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagc                                                                                           >  1:1639279‑M1/1‑90 (MQ=255)
             aCGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcac                                                                                         <  2:1233586‑M1/101‑14 (MQ=255)
              cGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcaca                                                                                        <  1:1142646‑M1/101‑15 (MQ=255)
              cGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcaca                                                                                        >  1:672614‑M1/1‑87 (MQ=255)
                aaTACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaat                                                                                      <  1:372306‑M1/101‑17 (MQ=255)
                aaTACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaat                                                                                      <  2:1661300‑M1/101‑17 (MQ=255)
                 aTACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatg                                                                                     <  2:37207‑M1/101‑18 (MQ=255)
                   aCGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcc                                                                                   <  2:304523‑M1/101‑20 (MQ=255)
                       aaGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgat                                                                               <  2:297824‑M1/101‑24 (MQ=255)
                          aTAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcg                                                                            >  2:1323922‑M1/1‑75 (MQ=255)
                            aaGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCATGCCGAATCCggcagtccagcacaataactgatgcgac                                                                          >  2:1022197‑M1/1‑73 (MQ=255)
                            aaGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgac                                                                          <  2:394221‑M1/101‑29 (MQ=255)
                               cGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgct                                                                       >  1:1699405‑M1/1‑70 (MQ=255)
                               cGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgct                                                                       >  1:642194‑M1/1‑70 (MQ=255)
                               cGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgct                                                                       >  2:593975‑M1/1‑70 (MQ=255)
                                gTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctg                                                                      <  1:813316‑M1/101‑33 (MQ=255)
                                    ggggTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgc                                                                  >  1:934079‑M1/1‑65 (MQ=255)
                                     gggTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcg                                                                 <  1:378582‑M1/101‑38 (MQ=255)
                                      ggTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgt                                                                >  2:394359‑M1/1‑63 (MQ=255)
                                        tAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGCTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtct                                                              >  2:1043168‑M1/1‑61 (MQ=255)
                                        tAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtct                                                              >  2:8117‑M1/1‑61 (MQ=255)
                                         aaGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctt                                                             <  2:18797‑M1/101‑42 (MQ=255)
                                          aGGGTTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGTTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctta                                                            <  1:706082‑M1/101‑43 (MQ=255)
                                          aGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctta                                                            <  1:705552‑M1/101‑43 (MQ=255)
                                          aGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtctta                                                            <  2:291036‑M1/101‑43 (MQ=255)
                                           ggATTGGTGTTCGTCGCAGCAAGCCATCCAGGCGGGATAAGGCATTCACGCCGCAGCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttat                                                           <  2:30890‑M1/101‑44 (MQ=255)
                                           ggATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttat                                                           <  2:496124‑M1/101‑44 (MQ=255)
                                            gATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatc                                                          <  2:477348‑M1/101‑45 (MQ=255)
                                              ttGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcag                                                        <  2:529197‑M1/101‑47 (MQ=255)
                                                 ctgttCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcc                                                     >  2:549896‑M1/2‑52 (MQ=255)
                                                  tgtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcct                                                    >  1:786720‑M1/1‑51 (MQ=255)
                                                   gtTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggccta                                                   >  2:793079‑M1/1‑50 (MQ=255)
                                                    ttCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctac                                                  <  2:672609‑M1/101‑53 (MQ=255)
                                                        tcgCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaa                                              <  2:1345358‑M1/101‑57 (MQ=255)
                                                         cgCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatggagcacaatgcctgatgggacgctgccgcgtcttatcaggcctacgagag                                             >  2:869306‑M1/1‑44 (MQ=255)
                                                         cgCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaag                                             >  1:1278785‑M1/1‑44 (MQ=255)
                                                           cagcaAGCCACCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagct                                           <  2:431341‑M1/101‑60 (MQ=255)
                                                            agcaAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagcta                                          <  2:357399‑M1/101‑61 (MQ=255)
                                                            agcaAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagcta                                          <  1:1298703‑M1/101‑61 (MQ=255)
                                                              caAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaat                                        <  1:1712958‑M1/101‑63 (MQ=255)
                                                                   cATCCAGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatca                                   <  1:904762‑M1/101‑68 (MQ=255)
                                                                        aGGCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgc                              >  2:161403‑M1/1‑29 (MQ=255)
                                                                         ggCCGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgct                             <  1:334751‑M1/101‑74 (MQ=255)
                                                                           ccGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctgg                           <  1:852933‑M1/101‑76 (MQ=255)
                                                                            cGGATAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggt                          >  1:520121‑M1/1‑25 (MQ=255)
                                                                              gATAAGGCATTCACGCCGCATCCggcaatcgagcccaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaa                        <  2:382118‑M1/101‑79 (MQ=255)
                                                                               aTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgttggtaat                       <  1:1043173‑M1/101‑80 (MQ=255)
                                                                               aTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaat                       >  2:1015531‑M1/1‑22 (MQ=255)
                                                                               aTAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaat                       >  1:888257‑M1/1‑22 (MQ=255)
                                                                                tAAGGCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatg                      >  1:1613904‑M1/1‑21 (MQ=255)
                                                                                   ggCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcg                   >  1:416171‑M1/1‑18 (MQ=255)
                                                                                    gCATTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgt                  >  1:1194782‑M1/1‑17 (MQ=255)
                                                                                      aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa                >  1:196812‑M1/1‑15 (MQ=255)
                                                                                      aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa                >  2:115205‑M1/1‑15 (MQ=255)
                                                                                      aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa                <  1:1512834‑M1/101‑87 (MQ=255)
                                                                                      aTTCACGCCGCATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaa                >  2:25565‑M1/1‑15 (MQ=255)
                                                                                             ccgcATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccattt         <  2:1613898‑M1/101‑94 (MQ=255)
                                                                                               gcATCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttgg       <  2:1220077‑M1/101‑96 (MQ=255)
                                                                                                 aTCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttggcg     >  1:1344481‑M1/1‑4 (MQ=255)
                                                                                                 aTCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttggcg     <  1:593980‑M1/101‑98 (MQ=255)
                                                                                                 aTCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttggcg     >  1:1232099‑M1/1‑4 (MQ=255)
                                                                                                 aTCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttggcg     >  1:1380648‑M1/1‑4 (MQ=255)
                                                                                                 aTCCggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggactacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttggcg     >  1:234817‑M1/1‑4 (MQ=255)
                                                                                                    cggcaatcgagcacaatgcctgatgcgacgctgccgcgtcttatcaggcctacgaaagctaatcatcacgcgctggtaatgtcgtaatccatttggcgcag  >  1:921139‑M1/1‑1 (MQ=255)
                                                                                                    |                                                                                                    
CAGTGATTTCGAGACGAATACGGAAGATAAGCGTCAGGGGTAAGGATTGGTGTTCGTCGCAGCAAGCCATCCAGGCCGGATAAGGCATTCACGCCGCATCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  15/48940‑49040

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.