| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | 107 | 1 = | 0 (0.000) | 48 (0.050) +T |
38/198 | 1.5 | 100% | intergenic (–/–) | –/– | –/– |
| ? | 223 | = 698 | 0 (0.000) | intergenic (–/–) | –/– | –/– | |||||
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGG > 107/1‑100 | agctgaacaggagggacagctggtagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCgtgt < 2:1119949‑M1/22‑1 (MQ=255)agctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCgtgt < 2:888287‑M1/22‑1 (MQ=255) gctgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGtgtt > 2:1510038‑M1/79‑101 (MQ=255) tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGtgttgt > 1:1287129‑M1/77‑101 (MQ=255) tgaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGtgttgt > 1:119001‑M1/77‑101 (MQ=255) gaacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTgttgtt < 1:1108865‑M1/26‑1 (MQ=255) aacaggagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGttgttg < 1:550217‑M1/27‑1 (MQ=255) gagggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACa > 2:23181‑M1/70‑101 (MQ=255) agggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACAt < 2:1644554‑M1/33‑1 (MQ=255) gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATc < 2:812035‑M1/34‑1 (MQ=255) gggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATc < 2:812084‑M1/34‑1 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCg < 1:967937‑M1/35‑1 (MQ=255) ggacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCg > 1:1142948‑M1/67‑101 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGt < 1:1694782‑M1/36‑1 (MQ=255) gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGt > 2:1369633‑M1/66‑101 (MQ=255) cagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAg > 2:1030545‑M1/64‑101 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgt > 2:263928‑M1/63‑101 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAgt < 1:1188963‑M1/39‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGAt < 1:577984‑M1/47‑1 (MQ=255) gaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGAt < 1:112927‑M1/47‑1 (MQ=255) aaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGAtt < 1:388524‑M1/48‑1 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgc < 1:501650‑M1/50‑1 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgc < 1:362462‑M1/50‑1 (MQ=255) cagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTgcg < 1:183603‑M1/51‑1 (MQ=255) gccactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTag > 2:1118027‑M1/46‑101 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTagag > 1:918770‑M1/44‑101 (MQ=255) ctggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGct < 2:1545169‑M1/60‑1 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGctt > 2:626427‑M1/41‑101 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGctt < 2:174007‑M1/61‑1 (MQ=255) tggagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGctt < 2:537361‑M1/61‑1 (MQ=255) gagcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGcttct < 1:1574420‑M1/63‑1 (MQ=255) agcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGcttctt > 2:444341‑M1/38‑101 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCttt > 1:1107593‑M1/37‑101 (MQ=255) cactcaaaaacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTAt < 2:392438‑M1/67‑1 (MQ=255) aacaccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGa > 2:1150734‑M1/27‑101 (MQ=255) ccatcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAgcgc < 2:1619289‑M1/79‑1 (MQ=255) atcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCAt < 1:1313478‑M1/81‑1 (MQ=255) tcatacactaaatcagtaaGTTTGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATc > 1:496847‑M1/20‑101 (MQ=255) tcatacactaaatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATc > 1:117272‑M1/20‑101 (MQ=255) aatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATAttt < 2:694390‑M1/92‑1 (MQ=255) aatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATAttt > 2:112927‑M1/10‑101 (MQ=255) aatcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATAttt < 2:554222‑M1/92‑1 (MQ=255) atcagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATAtttt > 1:1709488‑M1/9‑101 (MQ=255) cagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCt > 1:731051‑M1/7‑101 (MQ=255) cagtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCt > 2:1108860‑M1/7‑101 (MQ=255) agtaaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTa < 1:813806‑M1/96‑1 (MQ=255) taaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTAtt > 2:2082‑M1/4‑101 (MQ=255) aaGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTg < 1:1036469‑M1/99‑1 (MQ=255) aGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTgg < 1:1049798‑M1/100‑1 (MQ=255) aGTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTgg > 1:663579‑M1/2‑101 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTTGGCAGCATCACCGGCGTGTTGTTGCAACATCGTAGTGTGTGGATTGCGCCTAGAGCTTCTTTATTCGTTCGAGCGCATCGCCAATATTTTCTATTGG > 107/1‑100 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |