New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	91	8313 =	78 (1.270)	45 (0.780)	30/200	1.2	53.6%	intergenic (–/–)	–/–	–/–
	?	99	1 =	0 (0.000)					intergenic (–/–)	–/–	–/–

TGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  91/8411‑8313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGCGGCGACGTTGTTGTTCGCCTGCCGGTTTG  >  99/1‑99                                                                                                                                                                                                        taAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTC                                                                                                   >  2:717574/3‑101   AACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCAT                                                                                                 <  2:1492811/101‑1     CGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCA                                                                                               <  2:350544/101‑1     CGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCA                                                                                               <  2:305410/101‑1     CGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCA                                                                                               >  1:782283/1‑101       CCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGC                                                                                             >  2:376453/1‑101       CCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGC                                                                                             >  1:420951/1‑101         TTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCT                                                                                           >  1:1373882/1‑101         TTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCT                                                                                           >  1:641844/1‑101            TCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGAT                                                                                        <  1:2702/101‑1            TCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGAT                                                                                        <  2:782278/101‑1            TCCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGAT                                                                                        <  2:1293427/101‑1             CCGGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATG                                                                                       >  1:1307740/1‑101               GGCCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCC                                                                                     <  2:1183090/101‑1                 CCTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGG                                                                                   >  2:693435/1‑101                  CTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGG                                                                                  <  2:834603/101‑1                  CTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGG                                                                                  >  1:817243/1‑101                  CTACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGG                                                                                  >  1:1563080/1‑101                    ACAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGaacaaac                                                                                <  2:1113505/101‑8                     CAAAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCAT                                                                               >  2:330802/1‑101                       AAAGCATGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAG                                                                             <  2:1620446/101‑1                         atattgaatATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCC                                                                           >  2:527717/10‑101                            atGCAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGG                                                                        >  1:917777/3‑101                               CAAATTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCAT                                                                     <  1:100987/101‑1                                   TTCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAA                                                                 <  1:933430/101‑1                                    TCAATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAG                                                                >  1:697677/1‑101                                       ATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATT                                                             <  2:1243999/101‑1                                       ATATATTGCAGAGTTCACGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATT                                                             <  1:1250468/101‑1                                                agagttcaCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAG                                                    <  1:559990/93‑1                                                      caCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAG                                              <  2:420946/99‑1                                                         GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTT                                           >  2:597963/1‑101                                                         GTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTT                                           <  2:1151255/101‑1                                                                TGATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGG                                    <  2:917772/101‑1                                                                 GATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGA                                   >  1:1627172/1‑101                                                                  ATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGAC                                  >  1:1418449/1‑101                                                                  ATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGAC                                  >  1:680525/1‑101                                                                  ATAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACCCGGAC                                  <  2:1422743/101‑1                                                                   TAAGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACG                                 >  2:974532/1‑101                                                                     AGCGTAGCGCATCAGGCAGTTTTGCGTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGC                               <  1:527722/101‑1                                                                                              GTTTGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGCGGCGACGTTGTTGTTCGCCTGCCGG      <  2:508421/101‑1                                                                                                 TGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGCGGCGACGTTGTTGTTCGCCTGCCGGTTT   <  2:641839/101‑1                                                                                                 TGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGCGGCGACGTTGTTGTTCGCCTGCCGGTTT   <  2:1373876/101‑1                                                                                                 TGTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGCGGCGACGTTGTTGTTCGCCTGCCGGTTT   >  1:116370/1‑101                                                                                                  GTTCATCAGCCTGATGCCGGGGATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTTCCCGGAGGGCGGCGGCCTTGTTTTTCGTCTGGCGGGTTG  >  2:887151/1‑101                                                                                                  GTTCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGGTTACGCGGACGGCGGGGACGGTGTCGGTCGAGTGCCGGTTTG  >  2:1423387/1‑101                                                                                                                                                                                                        TGAACGCCTTATCCGGCCTACAAAAGCACGCAAATTCAATATATTGCAGAGATTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  91/8411‑8313 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCATCAGCCTGATGCCGGGCATAGCCCGGCATAAAAGATTACTGCGCAGCGGCAGGTTTACGCGGACGGCGGCGACGTTGTTGTTCGCCTGCCGGTTTG  >  99/1‑99

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.