New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 38 21218 =53 (0.870)44 (0.890) 40/172 0.2 65.9% intergenic (–/–) –/– –/–
?39 = 32788 0 (0.000)intergenic (–/–) –/– –/–

AAGCAGCTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  38/21331‑21218
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatcaggcctacCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAACGCGGTTAA  <  39/32788‑32689
                                                                                                                                                                                                                      
AAGCAGCTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTC                                                                                                                   >  2:911000/1‑101
AAGCAGCTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTC                                                                                                                   >  2:589916/1‑101
 AGCAGCTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCT                                                                                                                  <  1:227629/101‑1
     GCTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATC                                                                                                              >  2:1343981/1‑101
      CTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCA                                                                                                             <  1:1683163/101‑1
             ACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTAC                                                                                                      >  2:773242/1‑101
               AGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCG                                                                                                    <  1:194600/101‑1
                GAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGC                                                                                                   >  1:478147/1‑101
                          AGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATT                                                                                         >  1:1124012/1‑101
                               GGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCC                                                                                    >  2:1296398/1‑101
                                GGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCA                                                                                   <  1:58960/101‑1
                                 GAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAG                                                                                  <  2:1702985/101‑1
                                 GAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAG                                                                                  <  1:1274391/101‑1
                                  AATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGG                                                                                 >  2:1098139/1‑101
                                       CTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGA                                                                            <  1:1566496/101‑1
                                          GAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGA                                                                         >  2:25229/1‑101
                                             ATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGC                                                                      >  1:1139923/1‑101
                                             ATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGC                                                                      <  2:79922/101‑1
                                               ACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTATCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGT                                                                    >  1:85198/1‑101
                                               ACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGT                                                                    <  1:1319901/101‑1
                                                 TTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTT                                                                  >  1:640684/1‑101
                                                  TAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTA                                                                 >  2:323282/1‑101
                                                  TAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTA                                                                 <  1:1714200/101‑1
                                                   AATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTAT                                                                <  2:1204026/101‑1
                                                   AATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTAT                                                                <  1:1098144/101‑1
                                                            GAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCC                                                       >  2:526236/1‑101
                                                                AGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCA                                                   <  1:1572017/101‑1
                                                                   CTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTG                                                >  2:573242/1‑101
                                                                    TGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGT                                               >  1:29297/1‑101
                                                                      AAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTAC                                             <  1:1023035/101‑1
                                                                          AATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCG                                         <  1:1384226/101‑1
                                                                           ATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGA                                        >  1:449197/1‑101
                                                                           ATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGA                                        <  2:1220816/101‑1
                                                                             GCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATT                                      <  1:1390308/101‑1
                                                                              CCTGATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTA                                     <  1:898710/101‑1
                                                                                  ATGCGACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGC                                 >  1:1568804/1‑101
                                                                                      GACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACT                             >  1:1718332/1‑101
                                                                                      GACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACT                             >  2:1618505/1‑101
                                                                                       ACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTT                            <  2:782864/101‑1
                                                                                       ACGCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTT                            <  2:728998/101‑1
                                                                                         GCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCA                          <  2:1091642/101‑1
                                                                                         GCTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCA                          >  2:1561879/1‑101
                                                                                          CTTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAA                         >  1:779580/1‑101
                                                                                           TTAACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAA                        >  2:1424399/1‑101
                                                                                             AACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACG                      <  1:700831/101‑1
                                                                                              ACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGC                     >  2:1357794/1‑101
                                                                                              ACGCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGC                     <  2:550688/101‑1
                                                                                                GCGTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGG                   >  1:408846/1‑101
                                                                                                  GTCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGAC                 >  1:107310/1‑101
                                                                                                   TCTTATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACG                >  2:276749/1‑101
                                                                                                      TATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGAT             >  1:1670655/1‑101
                                                                                                      TATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGACAGTGTACGTCGATTAATGAAACTTCAAACGCGGACGGAT             >  2:1550101/1‑101
                                                                                                       ATCAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATA            >  1:315698/1‑101
                                                                                                         CAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAAC          <  1:402261/101‑1
                                                                                                         CAGGCCTACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAAC          <  2:1001409/101‑1
                                                                                                              CTACCGCTCGTTCCATTTGTCCAGGGCGGATGAGGCGTTTATGCCCCATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAACGCGGT     <  1:550243/101‑1
                                                                                                               TACCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAACGCGGTT    <  2:377634/101‑1
                                                                                                                ACCGCTCGTACCATTTGTCCAGGGCGGATGAGTTGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAACGCGGTTA   <  1:997663/101‑1
                                                                                                                 CCGTTCGTCCCATTTGTCCAGGGCGGATGAGGCTTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAACGCGGTTAA  <  2:1227385/101‑1
                                                                                                                                                                                                                      
AAGCAGCTATCAGACAGAAGATGAAAAGCGCGGGAATGGCTGGAAATACTTAATGATTCGGAGGAGTCTGAAGGAATGCCTGATGCGACGCTTAACGCGTCTTATCAGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  38/21331‑21218
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttatcaggcctacCGCTCGTACCATTTGTCCAGGGCGGATGAGGCGTTTATGCCACATCCGCCAGTGTACGTCGATTAATGCAACTTCAAACGCGGACGGATAACGCGGTTAA  <  39/32788‑32689

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.