New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	223	= 698	0 (0.000)	40 (0.040)	38/200	0.7	100%	intergenic (–/–)	–/–	–/–
	?	38	= 32819	0 (0.000)					intergenic (–/–)	–/–	–/–

AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  223/618‑698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAAATTCATCATC  <  38/32819‑32722                                                                                                                                                                                     AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCC                                                                                >  2:448423/1‑101    AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTT                                                                             <  2:96597/101‑1    AGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTT                                                                             >  2:613824/1‑101       TGAACAGGAGGGACAGCTGATAGAAACAGAACCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAA                                                                          <  1:799901/101‑1         AACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAA                                                                        >  2:1458167/1‑101          ACAGGAGTTACATCTTATAGAAAAAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAATTCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAAT                                                                       <  2:794621/101‑1            AGGAGGGACAGTTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCA                                                                     >  1:497709/1‑101            AGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCA                                                                     <  1:1200317/101‑1               AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACCCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCC                                                                  <  2:51079/101‑1               AGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCC                                                                  <  2:1227772/101‑1                GGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACTCCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCC                                                                 <  1:192042/101‑1                   ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCC                                                              >  1:1104460/1‑101                        TGATAGAGACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAA                                                         >  2:1034839/1‑101                        TGATAGAAACAGAAGCCAGTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAA                                                         >  2:1367831/1‑101                          ATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACG                                                       >  1:641876/1‑101                              AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGG                                                   >  1:321266/1‑101                               AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGT                                                  <  2:749459/101‑1                                  AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCC                                               <  1:308286/101‑1                                  AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCC                                               >  1:1620160/1‑101                                          CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCA                                       <  1:1038621/101‑1                                           TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAA                                      >  2:436460/1‑101                                              AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCC                                   <  2:1428814/101‑1                                               GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCC                                  <  1:466868/101‑1                                                CACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCA                                 >  1:786748/1‑101                                                 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCAT                                >  1:388991/1‑101                                                      AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCA                           <  2:1104455/101‑1                                                       AAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAG                          >  2:112462/1‑101                                                            ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGAT                     >  1:1050421/1‑101                                                              CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATAT                   <  1:1040808/101‑1                                                                TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTG                 >  1:784824/1‑101                                                                 CATACACTAAATCAGTAAGTTGGCAGCATCCCCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGA                <  2:618339/101‑1                                                                 CATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGA                >  1:239027/1‑101                                                                  ATACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAG               >  1:1612865/1‑101                                                                  ATACACGAAATCAGTAATGTGGCAGCACCACCGGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAG               <  1:1083803/101‑1                                                                    ACACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTA             <  2:388986/101‑1                                                                     CACTAAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAA            >  2:534321/1‑101                                                                       CTAAACCAGGAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAAAT          <  1:1034844/101‑1                                                                         AAATCAGTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAAATTC        >  1:1222788/1‑101                                                                               GTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAAATTCATCATC  <  1:216352/101‑1                                                                               GTAAGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAAATTCATCATC  >  1:478200/1‑101                                                                                                                                                                                     AGTAGCTGAACAGGAGGGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  223/618‑698 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGTTGGCAGCATCACCTGCCGTTGAAAATCAGCCCGCCGCCAACGCCGGTGCCGAGAATCAACCCCATCACCAGTGGATATTGAGTAAATTCATCATC  <  38/32819‑32722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.