New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	222	= 1443	0 (0.000)	75 (0.050)	56/196	0.3	99.3%	intergenic (–/–)	–/–	–/–
	?	50	2902 =	1 (0.010)					intergenic (–/–)	–/–	–/–

AATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  222/1348‑1443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caTTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATACTTAT  >  50/2902‑3001                                                                                                                                                                                                      AATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTC                                                                                                 >  2:1541659/1‑101  ATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCC                                                                                                >  1:882860/1‑101  ATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCC                                                                                                >  2:967000/1‑101  ATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCC                                                                                                >  1:1396385/1‑101   TTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCag                                                                                               >  2:1567030/1‑99   TTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCag                                                                                               <  1:1454317/101‑3    TAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGT                                                                                              <  1:62835/101‑1     AGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTA                                                                                             <  1:1260002/101‑1      GCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCagggc                                                                                            <  2:1468783/101‑6       CCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCagggct                                                                                           <  1:104366/101‑7        CTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATAT                                                                                          >  2:909382/1‑101         TGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATG                                                                                         >  1:125106/1‑101          GAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGT                                                                                        <  1:1477933/101‑1           AAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTA                                                                                       >  1:184260/1‑101               TAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAAC                                                                                   <  1:518315/101‑1               TAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAAC                                                                                   <  1:1562557/101‑1                  AAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGT                                                                                >  2:18461/1‑101                   AGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTC                                                                               <  1:378386/101‑1                   AGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTC                                                                               <  1:1138615/101‑1                    GGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCG                                                                              <  2:882855/101‑1                     GTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGC                                                                             >  2:1479157/1‑101                       CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCG                                                                           <  1:926287/101‑1                             CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAA                                                                     >  2:507286/1‑101                               AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAAT                                                                   >  1:911174/1‑101                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATT                                                                  >  1:322631/1‑101                                     ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTC                                                             >  1:853989/1‑101                                     ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTC                                                             >  2:734112/1‑101                                          GGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACAC                                                        >  1:314693/1‑101                                           GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACC                                                       <  2:913467/101‑1                                             ATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAA                                                     <  2:1622200/101‑1                                              TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAAC                                                    <  1:1338210/101‑1                                              TCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAAC                                                    <  1:1697710/101‑1                                               CAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACG                                                   <  1:915653/101‑1                                                 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCT                                                 >  1:1311410/1‑101                                                      ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCA                                            >  1:710020/1‑101                                                       TATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAG                                           <  1:1214624/101‑1                                                         TGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGAC                                         >  1:252704/1‑101                                                          GCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACG                                        <  2:1112880/101‑1                                                           CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGC                                       >  2:777565/1‑101                                                            CTCGTGTTTAACTGTTCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCT                                      <  1:1079489/101‑1                                                            CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCT                                      <  2:773485/101‑1                                                            CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCT                                      <  2:286407/101‑1                                                            CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCT                                      <  1:692753/101‑1                                                             TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTG                                     <  1:1479163/101‑1                                                             TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTG                                     <  2:495398/101‑1                                                               GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCC                                   >  2:944993/1‑101                                                                TGTTTAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATTTAGATCGGTCGCCGCCGAAAATTTGTTGAACACCAACGCTCGCCAGACGCTGCCG                                  <  2:1689178/101‑1                                                                    TAACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCA                              >  2:1519804/1‑101                                                                      ACTGTCGAACTTTTTGGGGTCAGTGCATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAG                            <  2:1096316/101‑1                                                                      ACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAG                            <  2:160216/101‑1                                                                      ACTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAG                            <  1:1688541/101‑1                                                                       CTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGC                           <  1:303046/101‑1                                                                       CTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGC                           >  1:656206/1‑101                                                                       CTGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGC                           >  1:486378/1‑101                                                                        TGTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCA                          >  2:480650/1‑101                                                                         GTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAG                         <  2:1612165/101‑1                                                                         GTCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAG                         >  2:1524657/1‑101                                                                          TCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGA                        >  1:1124712/1‑101                                                                          TCCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGA                        <  2:796131/101‑1                                                                           CCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACCACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGAT                       >  2:1482265/1‑101                                                                           CCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGAT                       >  1:330044/1‑101                                                                           CCAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGAT                       <  1:448426/101‑1                                                                            CAACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATA                      >  1:1646267/1‑101                                                                             AACTTTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAA                     <  2:682985/101‑1                                                                                 TTTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATAT                 <  1:508513/101‑1                                                                                  TTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATC                <  2:125106/101‑1                                                                                  TTTGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATC                <  2:643700/101‑1                                                                                    TGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCG              >  2:658170/1‑101                                                                                    TGGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCG              <  2:1111228/101‑1                                                                                     GGGGTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGC             <  1:734117/101‑1                                                                                        GTCAGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAG          >  1:617650/1‑101                                                                                           AGTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATA       >  2:335233/1‑101                                                                                            GTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATAC      >  1:756210/1‑101                                                                                            GTACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATAC      >  1:834178/1‑101                                                                                              ACATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATACTT    >  1:901551/1‑101                                                                                               CATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATACTTA   <  1:81929/101‑1                                                                                                ATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATACTTAT  >  2:103085/1‑101                                                                                                ATTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATACTTAT  <  1:900435/101‑1                                                                                                                                                                                                      AATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  222/1348‑1443 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caTTTTCCGTATATGTACAACGGTCGCCGCCGAAAATTTGTTCAACACCAACGCTCGCCAGACGCTGCCGGGCAAGCAGATAAATATCCGCCAGATACTTAT  >  50/2902‑3001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.