New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? 222 = 14430 (0.000)78 (0.050) 58/200 0.3 98.7% intergenic (–/–) –/– –/–
?45 = 27667 2 (0.030)intergenic (–/–) –/– –/–

GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  222/1347‑1443
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTGTACCGT  <  45/27667‑27569
                                                                                                                                                                                                    
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTT                                                                                                 <  1:141847/101‑1
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTT                                                                                                 <  2:294386/101‑1
    TAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGG                                                                                             >  1:1212296/1‑101
    TAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGG                                                                                             >  2:1625841/1‑101
     AGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGC                                                                                            >  2:445853/1‑101
            AATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTT                                                                                     <  2:376903/101‑1
            AATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTT                                                                                     >  1:1495137/1‑101
             ATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTG                                                                                    >  1:179793/1‑101
              TTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGA                                                                                   >  1:1078455/1‑101
                AAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGT                                                                                 <  1:790691/101‑1
                AAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGT                                                                                 >  1:1487317/1‑101
                 AAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTA                                                                                >  1:920672/1‑101
                  AAGGTCTGACTCCAATTGAATATCGGAATCACACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTTAGTAA                                                                               <  1:1225083/101‑1
                      TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTA                                                                           <  1:65380/101‑1
                      TCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTA                                                                           <  1:1465919/101‑1
                       CTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAA                                                                          >  1:306600/1‑101
                        TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAA                                                                         <  1:554556/101‑1
                        TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAA                                                                         <  2:1143846/101‑1
                        TGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAA                                                                         <  2:1695539/101‑1
                         GACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAAC                                                                        <  1:872539/101‑1
                          ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACC                                                                       <  2:791099/101‑1
                          ACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACC                                                                       <  2:335402/101‑1
                           CTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCC                                                                      >  2:122796/1‑101
                            TCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCT                                                                     <  1:119886/101‑1
                             CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTT                                                                    >  1:895698/1‑101
                             CCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTT                                                                    >  1:1185206/1‑101
                              CAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTC                                                                   <  2:127455/101‑1
                               AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT                                                                  <  1:1276634/101‑1
                               AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT                                                                  >  1:121554/1‑101
                               AATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCT                                                                  >  1:233435/1‑101
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTG                                                                 <  1:1337204/101‑1
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTG                                                                 >  2:1633319/1‑101
                                ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACGGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCTCTGTTGAGTAAAGTAAACCCTTCTG                                                                 <  2:1287601/101‑1
                                     ATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTT                                                            >  2:1054911/1‑101
                                       ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAT                                                          >  1:1047508/1‑101
                                       ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAT                                                          >  1:1710169/1‑101
                                       ATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTAT                                                          >  2:1071290/1‑101
                                         CGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCA                                                        <  2:748196/101‑1
                                           GAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAAC                                                      <  1:1251553/101‑1
                                            AATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACT                                                     >  1:441999/1‑101
                                                AGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCAT                                                 <  1:915918/101‑1
                                                 GACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATT                                                >  2:758668/1‑101
                                                  ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG                                               <  1:1068382/101‑1
                                                  ACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTG                                               <  2:1562833/101‑1
                                                   CCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGG                                              >  2:1087168/1‑101
                                                    CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC                                             >  2:1439141/1‑101
                                                    CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC                                             >  2:1661800/1‑101
                                                    CTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGC                                             >  2:1437141/1‑101
                                                     TATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCA                                            <  1:1172314/101‑1
                                                      ATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCAT                                           <  2:829835/101‑1
                                                           CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT                                      <  2:1234973/101‑1
                                                           CCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGT                                      <  2:738109/101‑1
                                                            CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG                                     >  1:1701390/1‑101
                                                            CTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTG                                     >  1:804306/1‑101
                                                             TCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGC                                    <  2:174131/101‑1
                                                              CGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCG                                   >  1:213716/1‑101
                                                               GTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGC                                  >  2:444934/1‑101
                                                                    TAACTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTT                             <  1:122796/101‑1
                                                                       CTGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCTACTGCATTGGCATCAGGTGCGCCAGTTCCG                          >  2:1541328/1‑101
                                                                        TGTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGC                         >  1:424835/1‑101
                                                                         GTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCG                        >  2:174153/1‑101
                                                                         GTCCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCG                        >  1:1421362/1‑101
                                                                           CCAACTTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGAC                      <  2:225974/101‑1
                                                                                TTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTAT                 <  1:1071295/101‑1
                                                                                TTTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTAT                 <  2:14995/101‑1
                                                                                 TTTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATG                <  1:540812/101‑1
                                                                                  TTTGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGGTCCGCGACCTTATGC               <  2:1277047/101‑1
                                                                                    TGGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCC             <  2:610520/101‑1
                                                                                     GGGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCG            >  2:610689/1‑101
                                                                                      GGGTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGT           >  2:262368/1‑101
                                                                                        GTCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCT         <  2:737355/101‑1
                                                                                         TCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTG        <  1:1465293/101‑1
                                                                                         TCAGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTG        <  2:365315/101‑1
                                                                                           AGTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTGTA      >  2:180680/1‑101
                                                                                            GTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCTTCTGTAC     >  1:576137/1‑101
                                                                                            GTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTGTAC     >  1:661892/1‑101
                                                                                            GTACAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTGTAC     <  1:956184/101‑1
                                                                                               CAATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTGTACCGT  <  2:1319501/101‑1
                                                                                                                                                                                                    
GAATTAGCCTGAAATTAAAAGGTCTGACTCCAATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  222/1347‑1443
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATTTGGGGCCGCCGTTGAGTAAAGTAAACCCTTCTGGCGTTATCAACTGCATTGGCATCAGGTGCGCCAGTTCCGCGACCTTATGCCCGTCTGTACCGT  <  45/27667‑27569

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.